PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA6564
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family MYB_related
Protein Properties Length: 661aa    MW: 71189.4 Da    PI: 7.5619
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA6564genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding27.66.7e-09202251148
                               TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT..TTS-HHHHHHHHHHHT CS
           Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmg..kgRtlkqcksrwqkyl 48 
                               r+ W++eEd  l  av+++G g+W+t a+      +Rt+ q+  rw +++
  Tp57577_TGAC_v2_mRNA6564 202 RKGWSEEEDNELRAAVQRWGEGNWATLAKGDHfsIKRTPHQLSQRWSTLR 251
                               667*************************976677569******9998875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.191197255IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.9E-11198254IPR009057Homeodomain-like
SuperFamilySSF466894.07E-11200253IPR009057Homeodomain-like
SMARTSM007171.4E-8201253IPR001005SANT/Myb domain
PfamPF002492.2E-7202250IPR001005SANT/Myb domain
CDDcd116601.61E-11205252No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 661 aa     Download sequence    Send to blast
MLENNPKKLT FSEIDAATLT QRYDAATVLT VLQELTHYTE SKFDWNELVK KTTSGISNAR  60
EYQMLWRHLA YRYDLPENLD EEGDEPMDDD SDIDCELESF PSASAESTLE PSACVKVIIA  120
SRTLSESTPS SSTIEAPLTV NFPVCCSSRT PKEISLSSNL MEQTSIMFPV FVNRQTLPTV  180
SSTDALETKG TDGSTMASKR KRKGWSEEED NELRAAVQRW GEGNWATLAK GDHFSIKRTP  240
HQLSQRWSTL RKKDGSTNSS ATVTNPVTPV TTNTPVTTNT QYTAEQLATR HSLNLALDMP  300
FKKLTAPGMT DPGNSMATGS ALMGTHPDFD WTQVSTVRSS VPPQTQVSTV RSSVPPQTQV  360
STVRSSVPPQ TPVSTVRSSV PPQTQVSTVR SSIPTQTQVS TVRSSIPAQR PSQQACGSPA  420
NPKLASENPV SKSNAIPACE LKPAIVHSGA QTVSRSNAMP QLKVAQAKNV VHTVPAGGSL  480
TKTPISAGLP SDQKVHSNVP AGSSLTKTTI SAGLPSDQKG HVTSVKEEEK RVSDPGSAPK  540
EVKGEEASTS TTQGKVDSKL DKMRLDLDKA KSMPSEKVLE HKAVSHNSGE CEEQGSVKNS  600
NCTPKKATEN GNGNSNKESQ VLNQDKKTVS ITGNSNHQNV NEKLVNLPKQ GECRQGLEVP  660
*
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA6564
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004501652.10.0uncharacterized protein LOC101514044
TrEMBLA0A2Z6M0X20.0A0A2Z6M0X2_TRISU; Uncharacterized protein
STRINGXP_004501652.10.0(Cicer arietinum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09710.12e-68MYB_related family protein