PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA6453
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family HD-ZIP
Protein Properties Length: 304aa    MW: 34904.3 Da    PI: 4.4665
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA6453genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox58.51.1e-1849102356
                               --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
                  Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                               k+++++ +q+++Le+ Fe ++++  +++ +LA++lgL+ rqV vWFqNrRa++k
  Tp57577_TGAC_v2_mRNA6453  49 KKRRLSVDQVKALEKNFEVENKLEPDRKVKLAQELGLQPRQVAVWFQNRRARWK 102
                               456899***********************************************9 PP
2HD-ZIP_I/II130.37.6e-4248140193
               HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeve 85 
                               +kkrrls +qvk+LE++Fe e+kLep+rKv+la+eLglqprqvavWFqnrRAR+ktkqlE+dy +Lk++ydalk ++++L++++e
  Tp57577_TGAC_v2_mRNA6453  48 QKKRRLSVDQVKALEKNFEVENKLEPDRKVKLAQELGLQPRQVAVWFQNRRARWKTKQLERDYGVLKAKYDALKLNHDNLQRDNE 132
                               69*********************************************************************************** PP

               HD-ZIP_I/II  86 eLreelke 93 
                               +L++e+ke
  Tp57577_TGAC_v2_mRNA6453 133 NLHKEVKE 140
                               *****987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466895.13E-1944106IPR009057Homeodomain-like
PROSITE profilePS5007117.45944104IPR001356Homeobox domain
SMARTSM003893.9E-1847108IPR001356Homeobox domain
CDDcd000863.20E-1548105No hitNo description
PfamPF000468.0E-1649102IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.607.8E-2051111IPR009057Homeodomain-like
PRINTSPR000318.3E-67584IPR000047Helix-turn-helix motif
PROSITE patternPS00027079102IPR017970Homeobox, conserved site
PRINTSPR000318.3E-684100IPR000047Helix-turn-helix motif
PfamPF021832.7E-17104146IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009414Biological Processresponse to water deprivation
GO:0009788Biological Processnegative regulation of abscisic acid-activated signaling pathway
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 304 aa     Download sequence    Send to blast
MDEEEQQQQV LRKNKEEQSP RNNNVYGREF QSMLEGLDEE GCVEEPGQKK RRLSVDQVKA  60
LEKNFEVENK LEPDRKVKLA QELGLQPRQV AVWFQNRRAR WKTKQLERDY GVLKAKYDAL  120
KLNHDNLQRD NENLHKEVKE LKSRLQLQEE NTTTESDVCV KQELLTMQES ENTNSDETAI  180
LRSDSKDLNY DDCFKGDVVA SLFPADFKDG SSDSDSSAIL NEENNSPNAA ISSSGVLQNH  240
NFFMSPGSSS LKFNCSESSS PSSMSSFQFQ TQYVKMEEHN FLGTDETCDF FSDEQPPTLQ  300
WWN*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
196104RRARWKTKQ
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00271DAPTransfer from AT2G22430Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA6453
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0507891e-137BT050789.1 Medicago truncatula clone MTYF5_F6_F7_F81G-J-3 unknown mRNA.
GenBankBT1337231e-137BT133723.1 Medicago truncatula clone JCVI-FLMt-17N17 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013446755.11e-169homeobox-leucine zipper protein ATHB-6
TrEMBLA0A2K3PKB10.0A0A2K3PKB1_TRIPR; Homeobox-leucine zipper protein ATHB-6-like
STRINGXP_004504111.11e-145(Cicer arietinum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22430.11e-68homeobox protein 6