PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Tp57577_TGAC_v2_mRNA6397

Organism

Trifolium pratense

Taxonomic ID

57577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium

Family

bZIP

Protein Properties

Length: 894aa MW: 95302.6 Da PI: 8.8423

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp57577_TGAC_v2_mRNA6397	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	64.4	2e-20	239	301	1	63
XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 e+elkr+rrkq+NRe+ArrsR+RK+ae++eL++++++L +eN +L+ el+++k e++k se+ Tp57577_TGAC_v2_mRNA6397 239 ERELKRQRRKQSNRESARRSRLRKQAECDELAQRAEVLNEENASLRAELSRIKSEYEKALSEN 301 89********************************************************99987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF16596	4.8E-46	68	206	No hit	No description
Gene3D	G3DSA:1.20.5.170	1.2E-16	232	296	No hit	No description
Pfam	PF00170	1.2E-18	239	301	IPR004827	Basic-leucine zipper domain
SMART	SM00338	2.2E-20	239	303	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	12.576	241	304	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	1.63E-9	242	295	No hit	No description
CDD	cd14702	1.40E-23	244	294	No hit	No description
PROSITE pattern	PS00036	0	246	261	IPR004827	Basic-leucine zipper domain
Pfam	PF04172	1.5E-41	657	881	IPR007300	CidB/LrgB family

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009658	Biological Process	chloroplast organization
GO:0009853	Biological Process	photorespiration
GO:0097339	Biological Process	glycolate transmembrane transport
GO:1901975	Biological Process	glycerate transmembrane transport
GO:0009706	Cellular Component	chloroplast inner membrane
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding
GO:0043879	Molecular Function	glycolate transmembrane transporter activity
GO:1901974	Molecular Function	glycerate transmembrane transporter activity

Sequence ? help Back to Top
Protein Sequence Length: 894 aa Download sequence Send to blast
MMPPYGTPPH PYVTMYPHHG GIYAHPSMPP GSYPFSPYAM PSPNGMVDAS GNTPGSSEAD 60 GKPHEVKEKL PIKRSRGSMG SMNMVTGRNN ELGKTPGASA NGIHSKSGGE SASEGTSEGS 120 NENSHNDSQL KSGERHDSYE DHEPSQNGNS AHAPQNGVLN TPPTVNQTMS VVPMSVAGPL 180 TTVPAPATNL NIGMEYWGTP TSSTIPAMHG KVPSTAVAGG MVNAGPRDGV HSQLWLQDER 240 ELKRQRRKQS NRESARRSRL RKQAECDELA QRAEVLNEEN ASLRAELSRI KSEYEKALSE 300 NAVLKERLGE IPRSEDLGPG QNDQHVGCEH TGSRLISAAS NPQKLTLLAI SMATHLLISP 360 FSLLTNHSLK PPSFFHSTLS ANSTPLLLPC IKKCSILCNP TTPIRLNSSF LQKGSHGNSK 420 SRQLSTKSAE TDSGSTSSLT QNVFGLLHLI VSLGLFLALD QFLKKAFVAA AIKFPSALFG 480 MFCIFSVLII LDSTVPPAAK ALVNFFEPAF LFIQRWLPLF YVPSLVVLPL SVKDIPAASG 540 IKICLIVXXX XXXXXXITTH YLDMLINALT YTPDTTLTLG GWLATLCVAG YTAIAVRKAV 600 KTQLVDAEPM GKPSPFSTVE VWTWSGILLT SFVSALYYPT LLGTSARTSL PFLLASTVLG 660 YIVGSGLPSN VKKVFHPIIC CALSAVLTAF AFGYFSKLGL DPVLGYYLTK VSADPGAGDI 720 LMGFLGSVIL SFSFSMFKQR KLVKRHAAEI FTSVIISTIF SLYSTALVGR LLQLEPSLTV 780 SILPRCITVA LALSIVSLFD GANPSLTAAV VVVTGLVGAN FVQATLDKLR FSDPIARGIA 840 TASSAHGLGT AALSAKEPEA LPFCAIAYAL NGIFGSLLCS VPIVRESLLA IVG*

Sequence ? help Back to Top

Protein Sequence Length: 894 aa Download sequence Send to blast

MMPPYGTPPH PYVTMYPHHG GIYAHPSMPP GSYPFSPYAM PSPNGMVDAS GNTPGSSEAD  60
GKPHEVKEKL PIKRSRGSMG SMNMVTGRNN ELGKTPGASA NGIHSKSGGE SASEGTSEGS  120
NENSHNDSQL KSGERHDSYE DHEPSQNGNS AHAPQNGVLN TPPTVNQTMS VVPMSVAGPL  180
TTVPAPATNL NIGMEYWGTP TSSTIPAMHG KVPSTAVAGG MVNAGPRDGV HSQLWLQDER  240
ELKRQRRKQS NRESARRSRL RKQAECDELA QRAEVLNEEN ASLRAELSRI KSEYEKALSE  300
NAVLKERLGE IPRSEDLGPG QNDQHVGCEH TGSRLISAAS NPQKLTLLAI SMATHLLISP  360
FSLLTNHSLK PPSFFHSTLS ANSTPLLLPC IKKCSILCNP TTPIRLNSSF LQKGSHGNSK  420
SRQLSTKSAE TDSGSTSSLT QNVFGLLHLI VSLGLFLALD QFLKKAFVAA AIKFPSALFG  480
MFCIFSVLII LDSTVPPAAK ALVNFFEPAF LFIQRWLPLF YVPSLVVLPL SVKDIPAASG  540
IKICLIVXXX XXXXXXITTH YLDMLINALT YTPDTTLTLG GWLATLCVAG YTAIAVRKAV  600
KTQLVDAEPM GKPSPFSTVE VWTWSGILLT SFVSALYYPT LLGTSARTSL PFLLASTVLG  660
YIVGSGLPSN VKKVFHPIIC CALSAVLTAF AFGYFSKLGL DPVLGYYLTK VSADPGAGDI  720
LMGFLGSVIL SFSFSMFKQR KLVKRHAAEI FTSVIISTIF SLYSTALVGR LLQLEPSLTV  780
SILPRCITVA LALSIVSLFD GANPSLTAAV VVVTGLVGAN FVQATLDKLR FSDPIARGIA  840
TASSAHGLGT AALSAKEPEA LPFCAIAYAL NGIFGSLLCS VPIVRESLLA IVG*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	255	261	RRSRLRK
2	255	262	RRSRLRKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Glycolate/glycerate transporter required for photorespiration. {ECO:0000269\|PubMed:21916894, ECO:0000269\|PubMed:22180599, ECO:0000269\|PubMed:23382251}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp57577_TGAC_v2_mRNA6397

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT145998	0.0	BT145998.1 Lotus japonicus clone JCVI-FLLj-21E7 unknown mRNA.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013446236.1	0.0	plastidal glycolate/glycerate translocator 1, chloroplastic isoform X1
Swissprot	Q9FVQ4	0.0	PLGG1_ARATH; Plastidal glycolate/glycerate translocator 1, chloroplastic
TrEMBL	A0A072TTT5	0.0	A0A072TTT5_MEDTR; Membrane protein, putative
STRING	GLYMA16G15800.1	0.0	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF6767	2	2

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G35530.1	1e-122	basic region/leucine zipper transcription factor 16

Link Out ? help Back to Top
Phytozome	Tp57577_TGAC_v2_mRNA6397

Publications ? help Back to Top
Ferro M, et al. Proteomics of the chloroplast envelope membranes from Arabidopsis thaliana. Mol. Cell Proteomics, 2003. 2(5): p. 325-45 [PMID:12766230] Carvalho MF,Turgeon R,Lazarowitz SG The geminivirus nuclear shuttle protein NSP inhibits the activity of AtNSI, a vascular-expressed Arabidopsis acetyltransferase regulated with the sink-to-source transition. Plant Physiol., 2006. 140(4): p. 1317-30 [PMID:16461385] Tyra HM,Linka M,Weber AP,Bhattacharya D Host origin of plastid solute transporters in the first photosynthetic eukaryotes. Genome Biol., 2007. 8(10): p. R212 [PMID:17919328] Yang Y, et al. A chloroplast envelope membrane protein containing a putative LrgB domain related to the control of bacterial death and lysis is required for chloroplast development in Arabidopsis thaliana. New Phytol., 2012. 193(1): p. 81-95 [PMID:21916894] Yamaguchi M, et al. Loss of the plastid envelope protein AtLrgB causes spontaneous chlorotic cell death in Arabidopsis thaliana. Plant Cell Physiol., 2012. 53(1): p. 125-34 [PMID:22180599] Pick TR, et al. PLGG1, a plastidic glycolate glycerate transporter, is required for photorespiration and defines a unique class of metabolite transporters. Proc. Natl. Acad. Sci. U.S.A., 2013. 110(8): p. 3185-90 [PMID:23382251] Nakahara J, et al. Bending of protonema cells in a plastid glycolate/glycerate transporter knockout line of Physcomitrella patens. PLoS ONE, 2015. 10(3): p. e0118804 [PMID:25793376] Maurino VG,Engqvist MK 2-Hydroxy Acids in Plant Metabolism. Arabidopsis Book, 2015. 13: p. e0182 [PMID:26380567] Rolland V,Badger MR,Price GD Redirecting the Cyanobacterial Bicarbonate Transporters BicA and SbtA to the Chloroplast Envelope: Soluble and Membrane Cargos Need Different Chloroplast Targeting Signals in Plants. Front Plant Sci, 2016. 7: p. 185 [PMID:26973659] Walker BJ,South PF,Ort DR Physiological evidence for plasticity in glycolate/glycerate transport during photorespiration. Photosyn. Res., 2016. 129(1): p. 93-103 [PMID:27251551] South PF, et al. Bile Acid Sodium Symporter BASS6 Can Transport Glycolate and Is Involved in Photorespiratory Metabolism in Arabidopsis thaliana. Plant Cell, 2017. 29(4): p. 808-823 [PMID:28351992] Dong H,Bai L,Chang J,Song CP Chloroplast protein PLGG1 is involved in abscisic acid-regulated lateral root development and stomatal movement in Arabidopsis. Biochem. Biophys. Res. Commun., 2018. 495(1): p. 280-285 [PMID:29097201]