PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Tp57577_TGAC_v2_mRNA6132

Organism

Trifolium pratense

Taxonomic ID

57577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium

Family

MYB_related

Protein Properties

Length: 467aa MW: 52975 Da PI: 5.274

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp57577_TGAC_v2_mRNA6132	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	30.1	1.1e-09	407	452	2	47
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.TTS-HHHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmg.kgRtlkqcksrwqky 47 W++ E++ l ++kq+G + WktI + +Rt+ ++k++w++ Tp57577_TGAC_v2_mRNA6132 407 RTWSELEEDNLRAGFKQFGYD-WKTICDSFTfDRRTPVDLKDKWRNM 452 68*****************.*********************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	4.0E-12	398	454	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.72E-10	400	456	IPR009057	Homeodomain-like
PROSITE profile	PS51294	17.88	401	457	IPR017930	Myb domain
SMART	SM00717	3.0E-9	405	455	IPR001005	SANT/Myb domain
CDD	cd11660	2.40E-12	407	454	No hit	No description
Pfam	PF00249	2.6E-7	407	452	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 467 aa Download sequence Send to blast
MGMGGLQHVL AQLTINTNTI KNLLQIIMLS DIDYRCKIAI LLRTLHDELN KSYIHQWMLQ 60 VLELLAQLYI HHSKPMTISF QEAYCAIAVE CTLRCLHTTT TRPNYITAVE TIWKDRVPYI 120 EMSWKSGLFT DELEKWKNEI LNSLLDARVM KKLESFTDNT NKIALQKLDF FLAKAWDDLG 180 PANNFDVIVN DSSVIASLIK GKFVNTVAAE KMDAISSCSK INSMPVDEVP TTGESLQCSS 240 AELENQDVED MNQEAQMESD ISDTVDDERM DAAISNSKIN SMPIDEVPKI GESLQCSSAE 300 LENQDVEDMN QEAQMENNSP DAYVPISQGC RSINNNKANH KKRTSARQSD VRHPSLMKSN 360 CTARTHEWDD SIGSQGGTSD TSKISLCSPK VRKLPPFKEY KPKRKKRTWS ELEEDNLRAG 420 FKQFGYDWKT ICDSFTFDRR TPVDLKDKWR NMIKYGKAQE PGQAQE*

Sequence ? help Back to Top

Protein Sequence Length: 467 aa Download sequence Send to blast

MGMGGLQHVL AQLTINTNTI KNLLQIIMLS DIDYRCKIAI LLRTLHDELN KSYIHQWMLQ  60
VLELLAQLYI HHSKPMTISF QEAYCAIAVE CTLRCLHTTT TRPNYITAVE TIWKDRVPYI  120
EMSWKSGLFT DELEKWKNEI LNSLLDARVM KKLESFTDNT NKIALQKLDF FLAKAWDDLG  180
PANNFDVIVN DSSVIASLIK GKFVNTVAAE KMDAISSCSK INSMPVDEVP TTGESLQCSS  240
AELENQDVED MNQEAQMESD ISDTVDDERM DAAISNSKIN SMPIDEVPKI GESLQCSSAE  300
LENQDVEDMN QEAQMENNSP DAYVPISQGC RSINNNKANH KKRTSARQSD VRHPSLMKSN  360
CTARTHEWDD SIGSQGGTSD TSKISLCSPK VRKLPPFKEY KPKRKKRTWS ELEEDNLRAG  420
FKQFGYDWKT ICDSFTFDRR TPVDLKDKWR NMIKYGKAQE PGQAQE*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp57577_TGAC_v2_mRNA6132

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A2K3LGP0	0.0	A0A2K3LGP0_TRIPR; Telomeric repeat-binding factor (Fragment)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2824	32	60

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G58340.2	1e-13	MYB_related family protein

Link Out ? help Back to Top
Phytozome	Tp57577_TGAC_v2_mRNA6132