PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Tp57577_TGAC_v2_mRNA5747

Organism

Trifolium pratense

Taxonomic ID

57577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium

Family

GRAS

Protein Properties

Length: 654aa MW: 74239.5 Da PI: 5.1185

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp57577_TGAC_v2_mRNA5747	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	354.6	1.5e-108	285	650	3	373
GRAS 3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsev 87 + L++cA+av+s d++++++lL+++++++s +gd +qRla+yf+ +L+ rla ++++ +p ++ + l+a+klf Tp57577_TGAC_v2_mRNA5747 285 TMLTQCAQAVASYDQRNTNELLKQIRQHSSAYGDGLQRLAHYFADGLEIRLAAETPS---YMPFCVAT---AGDMLKAYKLFITS 363 579************************************************4444...34444444...689******* PP GRAS 88 sPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAe 170 sP+ ++++ + ++I + v+ e+ vHiiDf+i +G+QWp+L++ L+ Rp+gpp+lRiTg++ p++g +e++eetg+rL ++++ Tp57577_TGAC_v2_mRNA5747 364 SPLQRMTNNLLTNTIIRVVKYESSVHIIDFGICYGFQWPCLIKRLSLRPGGPPKLRITGIDLPQAGfrPAERVEETGRRLGNYCK 448 *************************************************************9*************** PP GRAS 171 elgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFle 255 +++vpfe+n+ +a+++e+++le+L+++++E + V++ ++l++l+de+v+++ +r+++Lkl+k+++Pk++ + + +++++ Fl+ Tp57577_TGAC_v2_mRNA5747 449 KFNVPFEYNF-IAQKWETIRLEDLKIDRNEITLVSCLYRLKNLPDETVAVNCPREALLKLIKKINPKIFFHGVVNGSYSAPFFLT 532 ******.7********************************************************************* PP GRAS 256 rflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqakll 340 rf eal+++s+lfd++ea++pre+ +r ++E +++r++ nv+acegaer+er et+++W+ r ++aGFk+++l+++ ++q k++ Tp57577_TGAC_v2_mRNA5747 533 RFREALYHFSSLFDMFEANVPREDPQRLMLESSVFARDAINVIACEGAERVERPETYKQWQIRNRRAGFKQIRLDSELVNQTKTM 617 ********************************************************************************* PP GRAS 341 lrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373 ++k + + + v+e+ +++++gWk+r L ++SaW Tp57577_TGAC_v2_mRNA5747 618 VKKEYHKDFVVDEDGKWILQGWKGRILNAFSAW 650 *888*********************** PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	62.298	257	631	IPR005202	Transcription factor GRAS
Pfam	PF03514	5.3E-106	285	650	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 654 aa Download sequence Send to blast
MLSTNTFLQD FSVPNTVNTV TNGLELEDSS SSPSSVTCSY GDYEHTRYSN SILGYISDIL 60 MDEEYELENK PCMLQECLRL QAAEKSFYDV LGQNYPHSSC DDSTDPDGNF GRVASFESKS 120 SSCTTDTSYE SDWNNLVGEY NPSSLQLQTP LIEQNYSNLT EPDPVVIEQQ SASHFQNGTW 180 SWNDIQPVMV EEFSASLAPR EKRGYKINDD ESCNEPEGRG SKISAIFSDE IEPPEILDEV 240 LLYQSGGSQN QQPLQNLDSG GKSKATRSRQ KKVSNNNATA VDLWTMLTQC AQAVASYDQR 300 NTNELLKQIR QHSSAYGDGL QRLAHYFADG LEIRLAAETP SYMPFCVATA GDMLKAYKLF 360 ITSSPLQRMT NNLLTNTIIR VVKYESSVHI IDFGICYGFQ WPCLIKRLSL RPGGPPKLRI 420 TGIDLPQAGF RPAERVEETG RRLGNYCKKF NVPFEYNFIA QKWETIRLED LKIDRNEITL 480 VSCLYRLKNL PDETVAVNCP REALLKLIKK INPKIFFHGV VNGSYSAPFF LTRFREALYH 540 FSSLFDMFEA NVPREDPQRL MLESSVFARD AINVIACEGA ERVERPETYK QWQIRNRRAG 600 FKQIRLDSEL VNQTKTMVKK EYHKDFVVDE DGKWILQGWK GRILNAFSAW VPA*

Sequence ? help Back to Top

Protein Sequence Length: 654 aa Download sequence Send to blast

MLSTNTFLQD FSVPNTVNTV TNGLELEDSS SSPSSVTCSY GDYEHTRYSN SILGYISDIL  60
MDEEYELENK PCMLQECLRL QAAEKSFYDV LGQNYPHSSC DDSTDPDGNF GRVASFESKS  120
SSCTTDTSYE SDWNNLVGEY NPSSLQLQTP LIEQNYSNLT EPDPVVIEQQ SASHFQNGTW  180
SWNDIQPVMV EEFSASLAPR EKRGYKINDD ESCNEPEGRG SKISAIFSDE IEPPEILDEV  240
LLYQSGGSQN QQPLQNLDSG GKSKATRSRQ KKVSNNNATA VDLWTMLTQC AQAVASYDQR  300
NTNELLKQIR QHSSAYGDGL QRLAHYFADG LEIRLAAETP SYMPFCVATA GDMLKAYKLF  360
ITSSPLQRMT NNLLTNTIIR VVKYESSVHI IDFGICYGFQ WPCLIKRLSL RPGGPPKLRI  420
TGIDLPQAGF RPAERVEETG RRLGNYCKKF NVPFEYNFIA QKWETIRLED LKIDRNEITL  480
VSCLYRLKNL PDETVAVNCP REALLKLIKK INPKIFFHGV VNGSYSAPFF LTRFREALYH  540
FSSLFDMFEA NVPREDPQRL MLESSVFARD AINVIACEGA ERVERPETYK QWQIRNRRAG  600
FKQIRLDSEL VNQTKTMVKK EYHKDFVVDE DGKWILQGWK GRILNAFSAW VPA*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_A	9e-47	289	652	24	379	Protein SCARECROW
5b3h_D	9e-47	289	652	24	379	Protein SCARECROW
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp57577_TGAC_v2_mRNA5747

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013465416.1	0.0	scarecrow-like protein 30
TrEMBL	A0A072VCY3	0.0	A0A072VCY3_MEDTR; GRAS family transcription factor
STRING	AES67628	0.0	(Medicago truncatula)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF131	34	339

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G29060.1	1e-164	GRAS family protein

Link Out ? help Back to Top
Phytozome	Tp57577_TGAC_v2_mRNA5747