PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA5055
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family WRKY
Protein Properties Length: 356aa    MW: 40068.6 Da    PI: 7.0331
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA5055genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY1054e-33190247259
                               --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                      WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                               +Dgy+WrKYGqK vk+s++prsYYrCt+++C+vkk+vers edp++v++tYeg+Hnh+
  Tp57577_TGAC_v2_mRNA5055 190 EDGYRWRKYGQKAVKNSPYPRSYYRCTTQKCTVKKRVERSYEDPTTVITTYEGQHNHP 247
                               8********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.2E-34174249IPR003657WRKY domain
SuperFamilySSF1182901.44E-29181249IPR003657WRKY domain
PROSITE profilePS5081133.029184249IPR003657WRKY domain
SMARTSM007742.1E-38189248IPR003657WRKY domain
PfamPF031061.0E-25190247IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 356 aa     Download sequence    Send to blast
MSDEHRQPYF QNFLLDNNNN NYHQKTDQGS INNMFCEKQF STNPNLGSSY DCFDPSSYNM  60
SFTECLQGEN MDHHYNSSSL ANNSPFGVLS PSSSEVFSSV DQGNNQKPDI VGGETLLNSS  120
ISNSSSSEAG GGAEEEDSGK KKKNIGQVKE EPGQETTKNG NNKVEKKKGE KKQKEPRFAF  180
MTKSEVDQLE DGYRWRKYGQ KAVKNSPYPR SYYRCTTQKC TVKKRVERSY EDPTTVITTY  240
EGQHNHPVPT SLRGNAASMF TPSHLLSTPT PFTSTGSNYN FPQELLLHMH HHNNNNQSTT  300
YATSNASSIY SSSQHNNINN SLFQQYQQQV LPNHDQFGLL QDIVPSMFLN RSNHN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A5e-271822491077Probable WRKY transcription factor 4
2lex_A5e-271822491077Probable WRKY transcription factor 4
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00440DAPTransfer from AT4G18170Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA5055
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013457329.11e-140probable WRKY transcription factor 28
TrEMBLA0A2Z6N7171e-150A0A2Z6N717_TRISU; Uncharacterized protein
STRINGXP_004504707.11e-108(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF22313483
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18170.12e-48WRKY DNA-binding protein 28