PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA4932
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family WRKY
Protein Properties Length: 347aa    MW: 39603.4 Da    PI: 6.0208
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA4932genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY91.56.7e-29125186159
                               ---SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
                      WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                               ldD+y+WrKYGqK++ g++f+r+YYrCt++   gC ++k+v+rs+edp+++e+tY+g+H+++
  Tp57577_TGAC_v2_mRNA4932 125 LDDEYSWRKYGQKDILGAKFSRGYYRCTHRngqGCLATKQVQRSDEDPTIIEVTYKGRHTCS 186
                               58***************************99999**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.809.9E-28122187IPR003657WRKY domain
SuperFamilySSF1182907.98E-25124187IPR003657WRKY domain
SMARTSM007741.3E-39125187IPR003657WRKY domain
PROSITE profilePS5081121.54125183IPR003657WRKY domain
PfamPF031064.8E-26126185IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 347 aa     Download sequence    Send to blast
MEKTTSKRKH VSLINELIQG KELAKQLSNH IVLCSNETNE FLIDKIISTY QKTLTMLDHW  60
PNLEGENKTI DDGNNRDSHC SFTNESPKSE VIIKNKALFK KRKSMDTWKE QVKFGTNTGL  120
FEGSLDDEYS WRKYGQKDIL GAKFSRGYYR CTHRNGQGCL ATKQVQRSDE DPTIIEVTYK  180
GRHTCSQSKP LKKDFPSKLN IIGLDKNKHH NEKKNQLQKT QEASFTLKAE LDVKRMDLEE  240
TKEDIFPWFC FSSPSIESEN ETMMESFCHG FISPETSEAS FFGLSEYQLG CIGLCQNVQT  300
SESDITETVS ATTSVTNSPI LDLDILLHRG DFDTDFPFNI SEYFSS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B8e-181271831874Disease resistance protein RRS1
5w3x_D8e-181271831874Disease resistance protein RRS1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA4932
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003626559.11e-175probable WRKY transcription factor 41
TrEMBLG7L4271e-174G7L427_MEDTR; Putative transcription factor WRKY family
STRINGAES827771e-175(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF49334157
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11070.18e-47WRKY family protein