PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA4906
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family bHLH
Protein Properties Length: 583aa    MW: 64450.2 Da    PI: 5.7862
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA4906genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.54.8e-13415461455
                               HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
                       HLH   4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                               +h e+Er+RR+++N++f  Lr ++P+ +      K++Ka+ L  A+ YI++Lq
  Tp57577_TGAC_v2_mRNA4906 415 NHVEAERQRREKLNQRFYALRAVVPNiS------KMDKASLLGDAIAYINELQ 461
                               799***********************66......******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142151.3E-5250243IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088817.047411460IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000838.84E-15414464No hitNo description
SuperFamilySSF474593.01E-18414474IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.7E-10415461IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.108.6E-18415474IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.5E-16417466IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 583 aa     Download sequence    Send to blast
MGSTKRMLWD EQEKSMVGAV LGGRALDFLI TNCLSNESVL IGVGATDDSL QNKLSDLVEN  60
SSNFNWNYAI FWQLSQSKSG DYVLGWGDGC CREPSEEEEQ ESGGGVKGIL SLGMEKNEEE  120
QEDGVKQNMR KRVLQKLHTA FGGSDEDNYA FGLDRVTDTE MFFLASMYFS FPKGYGGPGK  180
CFASAKHLWF KSVSDYCVRS FLAKSAGIQT VVLVPTDFGV LELGSVRMLP ENFELLNTVN  240
SLFSISTSTS TTQSSSLYPR VINEGRDESG ISNAVQLPKV VLSLNNNGRT HFREKLAIRK  300
MDHSSSINFP IVRNGVCGSS TWGVNQGQGE IFAPNGVRKD FRLNNNNSNY QPQRQVQMQM  360
EIDFTGANLR ANSVRPVIGE PELAAADVEA DQPSDGRRPR KRGRKPANGR DEPLNHVEAE  420
RQRREKLNQR FYALRAVVPN ISKMDKASLL GDAIAYINEL QAKLNVMESE RETFGSSTSK  480
DGSANSRSEN RHQNIRVPPP DVDIEASKDE VTVKVSCSLD THPVSKLMET FKEAQISVVE  540
SKLAAANDTI YHTFVIKSQG SEELTKDKLI AAFSRESNAL QI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A1e-29409471264Transcription factor MYC2
5gnj_B1e-29409471264Transcription factor MYC2
5gnj_E1e-29409471264Transcription factor MYC2
5gnj_F1e-29409471264Transcription factor MYC2
5gnj_G1e-29409471264Transcription factor MYC2
5gnj_I1e-29409471264Transcription factor MYC2
5gnj_M1e-29409471264Transcription factor MYC2
5gnj_N1e-29409471264Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1396404RRPRKRGRK
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that negatively regulates jasmonate (JA) signaling (PubMed:30610166). Negatively regulates JA-dependent response to wounding, JA-induced expression of defense genes, JA-dependent responses against herbivorous insects, and JA-dependent resistance against Botrytis cinerea infection (PubMed:30610166). Plays a positive role in resistance against the bacterial pathogen Pseudomonas syringae pv tomato DC3000 (PubMed:30610166). {ECO:0000269|PubMed:30610166}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00100PBMTransfer from AT1G01260Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA4906
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by wounding, feeding with herbivorous insects, infection with the fungal pathogen Botrytis cinerea and infection with the bacterial pathogen Pseudomonas syringae pv tomato DC3000. {ECO:0000269|PubMed:30610166}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013450654.10.0transcription factor bHLH13
SwissprotA0A3Q7ELQ20.0MTB1_SOLLC; Transcription factor MTB1
TrEMBLA0A2K3KYY30.0A0A2K3KYY3_TRIPR; Transcription factor bHLH13-like protein
STRINGXP_004494832.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF54483254
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01260.31e-161bHLH family protein
Publications ? help Back to Top
  1. Tomato Genome Consortium
    The tomato genome sequence provides insights into fleshy fruit evolution.
    Nature, 2012. 485(7400): p. 635-41
    [PMID:22660326]
  2. Sun H,Fan HJ,Ling HQ
    Genome-wide identification and characterization of the bHLH gene family in tomato.
    BMC Genomics, 2015. 16: p. 9
    [PMID:25612924]
  3. Liu Y, et al.
    MYC2 Regulates the Termination of Jasmonate Signaling via an Autoregulatory Negative Feedback Loop.
    Plant Cell, 2019. 31(1): p. 106-127
    [PMID:30610166]