PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA441
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family Trihelix
Protein Properties Length: 377aa    MW: 41328.2 Da    PI: 9.9561
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA441genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix52.21.6e-1667156186
                 trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm....rergferspkqCkekwenlnkrykkikegekkrtsessstcpyf 82 
                              +W++  + +Liea  e+  +l+rg+lk+++W+ev++ +       ++ ++ +qCk++++ ++k+yk +k+    +   ++s++p++
  Tp57577_TGAC_v2_mRNA441  67 CWSEGATAVLIEAWGERYMELSRGNLKQKHWKEVAEIVngreDYMKVPKTDIQCKNRIDTVKKKYKSEKAKIAAGGGVTTSNWPFY 152
                              7*************************************98655567778999*******************9999999999***** PP

                 trihelix  83 dqle 86 
                              d+l+
  Tp57577_TGAC_v2_mRNA441 153 DRLD 156
                              **98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138375.4E-2665158No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0010431Biological Processseed maturation
Sequence ? help Back to Top
Protein Sequence    Length: 377 aa     Download sequence    Send to blast
MDDDDEIHSN PSPLSGSPVS SPGAIGRISV TVAAPAPESH PVTNSYALAL PIQNQVRGNN  60
GGGREDCWSE GATAVLIEAW GERYMELSRG NLKQKHWKEV AEIVNGREDY MKVPKTDIQC  120
KNRIDTVKKK YKSEKAKIAA GGGVTTSNWP FYDRLDQLIG PTAKITGSTS AGNSNLPPQK  180
VPLGIPVGLH AGGGANQFNS QKKNKKPQPQ VQPQLNYQKV QLRPRVVAVD SDNSSEREAL  240
SPVSSDSLPP PDSQERKRAK VMNSNAAKGT EGRKKGWGSG VRELTQAIVK FGEAYEQAET  300
SKLQQVVEME KQRMKFAKDL ELQRMQFFMK TQVEISQLKL GRKNVNGIGN TSNHHHNNNE  360
KNNMNNNNHN NNSDSE*
Functional Description ? help Back to Top
Source Description
UniProtTranscription regulator that may repress the maturation program during early embryogenesis. {ECO:0000269|PubMed:21330492}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00356DAPTransfer from AT3G14180Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA441
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1520572e-78AC152057.11 Medicago truncatula chromosome 8 clone mth2-25a12, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004510544.11e-163trihelix transcription factor ASIL2
SwissprotQ9LJG81e-103ASIL2_ARATH; Trihelix transcription factor ASIL2
TrEMBLA0A2K3MVG50.0A0A2K3MVG5_TRIPR; Putative basic-leucine zipper transcription factor e-like protein
STRINGXP_004510544.11e-163(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF79193044
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G14180.13e-51sequence-specific DNA binding transcription factors