PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Tp57577_TGAC_v2_mRNA42048 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
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Family | MYB_related | ||||||||
Protein Properties | Length: 117aa MW: 13243.6 Da PI: 4.3928 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 29.6 | 1.7e-09 | 1 | 22 | 24 | 46 |
HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 24 WktIartmgkgRtlkqcksrwqk 46 W++Ia++++ gRt++++k++w++ Tp57577_TGAC_v2_mRNA42048 1 WSKIAKHLP-GRTDNEIKNYWRT 22 *********.***********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00249 | 2.3E-7 | 1 | 22 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 1.25E-7 | 1 | 32 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 2.3E-12 | 1 | 33 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 3.12E-8 | 1 | 22 | No hit | No description |
PROSITE profile | PS51294 | 16.257 | 1 | 28 | IPR017930 | Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 117 aa Download sequence Send to blast |
WSKIAKHLPG RTDNEIKNYW RTRIQKHIKQ AENSQQQSSS DIQINDNDNQ IGSTSQISAM 60 PEPMDINIIS PPSYQGMLEP FPNQFPTISD QSSCCTNDNN YWSMEDLLSL QLLNGD* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. {ECO:0000305}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Tp57577_TGAC_v2_mRNA42048 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004516765.1 | 4e-54 | myb-related protein 305-like isoform X1 | ||||
Refseq | XP_004516766.1 | 4e-54 | myb-related protein 305-like isoform X2 | ||||
Swissprot | P81391 | 2e-25 | MYB05_ANTMA; Myb-related protein 305 | ||||
TrEMBL | A0A1S2Z849 | 1e-52 | A0A1S2Z849_CICAR; myb-related protein 305-like isoform X2 | ||||
TrEMBL | A0A1S2Z855 | 1e-52 | A0A1S2Z855_CICAR; myb-related protein 305-like isoform X1 | ||||
STRING | XP_004516765.1 | 2e-53 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3305 | 34 | 69 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G27810.1 | 2e-19 | myb domain protein 21 |
Link Out ? help Back to Top | |
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Phytozome | Tp57577_TGAC_v2_mRNA42048 |
Publications ? help Back to Top | |||
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