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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Tp57577_TGAC_v2_mRNA4189 |
| Organism |
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| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
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| Family |
GRAS |
| Protein Properties |
Length: 456aa MW: 52635.5 Da PI: 6.3607 |
| Description |
GRAS family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Tp57577_TGAC_v2_mRNA4189 | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | GRAS | 267.3 | 5.1e-82 | 86 | 453 | 2 | 374 |
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetsekn.sseelaalkl.. 83
+ L+++Ae vs +++e+a++lL + ++s +g+++qR+++yf +AL +r+ +++ ++ k se++e+ ++++ k+
Tp57577_TGAC_v2_mRNA4189 86 AQFLFSAAERVSFQQFERAKKLLFYCQWNSSITGNSVQRIVFYFSQALLERIEKETGRVIK---GSEKNEEVeLIQNMDPKKAls 167
678***************************************************5555554...444443333555555555544 PP
GRAS 84 fsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRp.egppslRiTgvgspesgskeeleetgerLak 167
++ P+ ++ ++t qaI+e v e+++H iD++i+ G+Q ++L+qaLa+R+ +++T++g ++ k+++eetg++La+
Tp57577_TGAC_v2_mRNA4189 168 CHQKIPFNQVMQFTGIQAIVEHVMFETKIHLIDLNIKSGVQCITLMQALADRKdCMVEIFKVTAIGVNS--CKDKIEETGKNLAS 250
67899***********************************************9445669********55..************** PP
GRAS 168 fAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnses 252
fA +l++pf f++++++++ +++ ++++++++Ea+aV + + l +l +++ sle+ +++++ ++P +++v e ea++ns+s
Tp57577_TGAC_v2_mRNA4189 251 FAVSLNLPFLFKAILVEDMLEIKEDDFQIEEDEAVAVYSPYFLRTLISRQESLEN----LMRVIMYIKPSIMIVLEIEASLNSPS 331
***********************************************99999999....************************** PP
GRAS 253 FlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqa 337
F++rf+eal +ysa+fd +e+ + +e+e r++ E l+ i+n+va+eg+er+ r+ + Wr+ + + + + ++se + qa
Tp57577_TGAC_v2_mRNA4189 332 FVNRFVEALFHYSAFFDIIETCIKEEDECRMMTEGI-LSAGIRNIVATEGSERNVRNVKIDVWRKFFARYRMVETRFSEACNYQA 415
***********************9999999999988.************************************************ PP
GRAS 338 klllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374
+l+++k++ ++ +ve++ ++l+lgWk+ p+ s+SaWr
Tp57577_TGAC_v2_mRNA4189 416 ELVVKKFDyGNFCNVEKNGKCLILGWKGTPMHSISAWR 453
********88889************************8 PP
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| Sequence ? help Back to Top |
| Protein Sequence Length: 456 aa
Download sequence Send
to blast |
LSLSSLEILR NHGSRFNKKN IINTKTSSNL EQHQNMSTEE IIRVAGTRYT QYSSSHWSEN 60
ICIQTHPYGF DFHGLTEEQN RDIELAQFLF SAAERVSFQQ FERAKKLLFY CQWNSSITGN 120
SVQRIVFYFS QALLERIEKE TGRVIKGSEK NEEVELIQNM DPKKALSCHQ KIPFNQVMQF 180
TGIQAIVEHV MFETKIHLID LNIKSGVQCI TLMQALADRK DCMVEIFKVT AIGVNSCKDK 240
IEETGKNLAS FAVSLNLPFL FKAILVEDML EIKEDDFQIE EDEAVAVYSP YFLRTLISRQ 300
ESLENLMRVI MYIKPSIMIV LEIEASLNSP SFVNRFVEAL FHYSAFFDII ETCIKEEDEC 360
RMMTEGILSA GIRNIVATEG SERNVRNVKI DVWRKFFARY RMVETRFSEA CNYQAELVVK 420
KFDYGNFCNV EKNGKCLILG WKGTPMHSIS AWRFL*
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| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | AC171533 | 0.0 | AC171533.3 Medicago truncatula chromosome 7 BAC clone mth2-82b20, complete sequence. |
