PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Tp57577_TGAC_v2_mRNA41509

Organism

Trifolium pratense

Taxonomic ID

57577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium

Family

bHLH

Protein Properties

Length: 167aa MW: 19125.7 Da PI: 9.0306

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp57577_TGAC_v2_mRNA41509	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	35.4	1.9e-11	45	87	7	54
HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS HLH 7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 ++ r RR+ri ++f L++++P + Kl+ +++Le+A++YIk L Tp57577_TGAC_v2_mRNA41509 45 IAARERRHRISDRFKILQSMVPGgN------KLDTVSMLEEAIHYIKFL 87 56799***************955......**************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	15.402	38	87	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	4.58E-14	43	96	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.4E-12	44	93	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	3.38E-13	44	91	No hit	No description
Gene3D	G3DSA:4.10.280.10	3.6E-12	45	91	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	6.9E-9	46	87	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 167 aa Download sequence Send to blast
MECYNNTFSY SSGSSSKTKE KKEKGVKKIK TKRSSVKLST DPQSIAARER RHRISDRFKI 60 LQSMVPGGNK LDTVSMLEEA IHYIKFLKTQ ILLHQTMINF VDDIDESSSH MLLPQDNYYS 120 PNDNIIQHST FGSVESMQNL PQLPPDQFCF QGDQDTKTMF NITMKY*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp57577_TGAC_v2_mRNA41509

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003623323.1	6e-67	transcription factor LAX PANICLE 1
Swissprot	Q9M041	7e-32	BH140_ARATH; Transcription factor bHLH140
TrEMBL	A0A2K3MAQ7	1e-120	A0A2K3MAQ7_TRIPR; LAX protein
STRING	AES79541	2e-66	(Medicago truncatula)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF7167	28	46

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G01310.1	1e-33	APRATAXIN-like

Link Out ? help Back to Top
Phytozome	Tp57577_TGAC_v2_mRNA41509

Publications ? help Back to Top
Heyndrickx KS,Vandepoele K Systematic identification of functional plant modules through the integration of complementary data sources. Plant Physiol., 2012. 159(3): p. 884-901 [PMID:22589469]