PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Tp57577_TGAC_v2_mRNA41115 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
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Family | FAR1 | ||||||||
Protein Properties | Length: 236aa MW: 26670.1 Da PI: 6.3915 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 64.6 | 2.7e-20 | 85 | 173 | 2 | 89 |
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkek.dgkwevtklel 83 fY+ +Ak+ GFsvrk + ++ ++g+i ++tf Cs+eg+re++ + ++++r++++etr+ C+ak +v+ + + +w+vt le Tp57577_TGAC_v2_mRNA41115 85 FYCWFAKTSGFSVRKGHVVRN-HEGNILQQTFLCSCEGFREDRGLTlENRKREPKNETRCWCNAKCRVHVDIvSMRWYVTLLEI 167 9*****************999.7788*****************9997889999****************9999*********** PP FAR1 84 eHnHel 89 +H+H+l Tp57577_TGAC_v2_mRNA41115 168 DHTHDL 173 ****99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 3.7E-18 | 85 | 174 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 236 aa Download sequence Send to blast |
LGTDISNGGP SYSVGGGSSN PDESLDGSFD EIWNDTEDQS FGYGCEVEAV VIKDMADIMK 60 IDLNNFRVAD VRKYEFVGLD VAYMFYCWFA KTSGFSVRKG HVVRNHEGNI LQQTFLCSCE 120 GFREDRGLTL ENRKREPKNE TRCWCNAKCR VHVDIVSMRW YVTLLEIDHT HDLLGVTLCG 180 LLPAHRKMSQ GDIDEIERNR KAGIRPYQVY GSMANTSGGF HKVGFVKKDL YNQVGK |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Tp57577_TGAC_v2_mRNA41115 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024630796.1 | 6e-65 | protein FAR1-RELATED SEQUENCE 5 | ||||
TrEMBL | A0A2K3MEL2 | 1e-140 | A0A2K3MEL2_TRIPR; FAR1 DNA-binding domain protein (Fragment) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3290 | 7 | 52 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G28530.1 | 3e-16 | FAR1-related sequence 10 |
Link Out ? help Back to Top | |
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Phytozome | Tp57577_TGAC_v2_mRNA41115 |