PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA41032
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family MYB_related
Protein Properties Length: 429aa    MW: 48488.3 Da    PI: 6.7299
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA41032genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding50.35.4e-164387147
                               TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
            Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                               r +WT eE++++++a k++G   W++I +++g ++t+ q++s+ qk+
  Tp57577_TGAC_v2_mRNA41032 43 REKWTDEEHKKFLEALKLFGRA-WRKIEEHVG-TKTAVQIRSHAQKF 87
                               789*****************88.*********.************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466898.22E-173793IPR009057Homeodomain-like
PROSITE profilePS5129419.563892IPR017930Myb domain
Gene3DG3DSA:1.10.10.604.2E-94092IPR009057Homeodomain-like
TIGRFAMsTIGR015572.8E-164190IPR006447Myb domain, plants
SMARTSM007177.8E-134290IPR001005SANT/Myb domain
PfamPF002491.1E-134386IPR001005SANT/Myb domain
CDDcd001671.41E-94588No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
GO:0009734Biological Processauxin-activated signaling pathway
GO:0010600Biological Processregulation of auxin biosynthetic process
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 429 aa     Download sequence    Send to blast
MEILGQKEEM HSVVHVHKLL DQFSCGNDYA LKVRKPYTIT KQREKWTDEE HKKFLEALKL  60
FGRAWRKIEE HVGTKTAVQI RSHAQKFFSK INRDTNGNDT TMVETIEIPP PRPKRKPIHP  120
YPRKLVEIPK NEISNLEQPL RSNSLVSLDF GQENNSPKSV LSAVASETLG FSDSDTPTGS  180
LSPVSSISAV HKHSFPLLES KSSSSEEDLS QQIDELNADS AHDEQPLMKL ELFSNESVFT  240
KDDEAIEESP CRTLKLFGTT LLVNDTCKPS SASTDASKPV PSMHLTQQLQ RRCSDISLAT  300
VVPSMHLTQQ LQRRYSDIGL ATVSRWWTVS DNSAFKPPHN EHEGENSHSN HGECEDKDIQ  360
KEQSCVGSNT SSINDGEINE RESQCSPVRH KTLMKGFVPY KRCMSERESH CSTITDERRE  420
HQRMRLSL*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00515DAPTransfer from AT5G17300Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA41032
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1417010.0BT141701.1 Medicago truncatula clone JCVI-FLMt-19O16 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003616176.10.0protein REVEILLE 1
TrEMBLA0A2K3MVZ80.0A0A2K3MVZ8_TRIPR; MYB family transcription factor
STRINGAES991340.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF29563372
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G17300.15e-51MYB_related family protein