PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA40522
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family MYB
Protein Properties Length: 311aa    MW: 35123.4 Da    PI: 8.566
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA40522genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.41.2e-162269148
                               TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
            Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                               +g+WT+eEd++l+ +++ +G g+W++ ++  g+ R++k+c++rw +yl
  Tp57577_TGAC_v2_mRNA40522 22 KGAWTKEEDDRLISYIRAHGEGCWRSLPKAAGLLRCGKSCRLRWINYL 69
                               79******************************99************97 PP
2Myb_DNA-binding59.76.2e-1975119147
                                TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
            Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                                rg++T+eEdel+++++ +lG++ W++Ia +++ gRt++++k++w+++
  Tp57577_TGAC_v2_mRNA40522  75 RGNFTEEEDELIIKLHSLLGNK-WSLIAGRLP-GRTDNEIKNYWNTH 119
                                89********************.*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.607.6E-241372IPR009057Homeodomain-like
PROSITE profilePS5129416.4071769IPR017930Myb domain
SuperFamilySSF466892.33E-2921116IPR009057Homeodomain-like
SMARTSM007173.2E-132171IPR001005SANT/Myb domain
PfamPF002493.5E-152269IPR001005SANT/Myb domain
CDDcd001671.02E-92469No hitNo description
PROSITE profilePS5129429.41170124IPR017930Myb domain
Gene3DG3DSA:1.10.10.604.1E-2873124IPR009057Homeodomain-like
SMARTSM007176.3E-1874122IPR001005SANT/Myb domain
PfamPF002494.2E-1775119IPR001005SANT/Myb domain
CDDcd001671.47E-1277120No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0010224Biological Processresponse to UV-B
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:1903086Biological Processnegative regulation of sinapate ester biosynthetic process
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 311 aa     Download sequence    Send to blast
LKHKNNNNMG RSPCCEKAHT NKGAWTKEED DRLISYIRAH GEGCWRSLPK AAGLLRCGKS  60
CRLRWINYLR PDLKRGNFTE EEDELIIKLH SLLGNKWSLI AGRLPGRTDN EIKNYWNTHI  120
RRKLLNRGID PATHRPLNEP PHSSHSHSQS QSQSLHLQNH NQNQESVTIA VVAASATTTT  180
TTTIPAVTVP TTTISFASSI KQEQYHHHHH HHYNHNHNQE MMIKGSVLER CPDLNLELTI  240
SPPRQQEQDE QFKNSRNLCF VCSLGLQNSK DCSCDEIVGN SSTGNASTTP AYDFLGLKAG  300
VWDYKGLEMK *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C5e-292112426128MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. {ECO:0000305}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00479DAPTransfer from AT4G38620Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA40522
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT6991060.0KT699106.1 Trifolium repens MYB4 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003607200.11e-177myb-related protein 308
SwissprotP813931e-110MYB08_ANTMA; Myb-related protein 308
TrEMBLA0A2K3NZ161e-180A0A2K3NZ16_TRIPR; MYB-related protein 308-like protein
STRINGAES893971e-177(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF26434221
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38620.17e-91myb domain protein 4
Publications ? help Back to Top
  1. Jackson D,Culianez-Macia F,Prescott AG,Roberts K,Martin C
    Expression patterns of myb genes from Antirrhinum flowers.
    Plant Cell, 1991. 3(2): p. 115-25
    [PMID:1840903]