PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA40521
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family bHLH
Protein Properties Length: 307aa    MW: 33558.5 Da    PI: 6.5873
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA40521genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH37.73.6e-12212257555
                                HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                        HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                                h+++Er RR+ri +++  L+el+P+a      K +Ka++L + ++Y+k Lq
  Tp57577_TGAC_v2_mRNA40521 212 HSIAERLRRERIAERMKALQELVPNA-----NKTDKASMLDEIIDYVKFLQ 257
                                99***********************8.....6******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000837.13E-14205261No hitNo description
SuperFamilySSF474593.01E-17205267IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.39207256IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.4E-16209266IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.8E-9212257IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.2E-13213262IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 307 aa     Download sequence    Send to blast
MQPCSREMQS LNSLFNSSSS SEIPIPQLQN HSQIQINNNN DAFHNDDFLK QMLSNLPPSS  60
PWTLDPNNPK PLWDPNSDEN VTFPNYEEQH NNLSSKFRNH QITDKSAAAL MLLMPTAADS  120
GLLHMPADFD SSQNDVVNAS SAGDGSVQAL FNGFSGSLHG VAANQTHHFQ PPQGQSFGGG  180
SVSATNQAPA SGAPAQPRQK VRARRGQATD PHSIAERLRR ERIAERMKAL QELVPNANKT  240
DKASMLDEII DYVKFLQVQV KVLSMSRLGG AAAVAPLVAD MSSEVNFRTI FHFLSEFTKV  300
IVVHYL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1216221RLRRER
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA40521
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU4167621e-164EU416762.1 Trifolium repens clone CloverSSR-024_E04_012_1 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003610348.21e-152transcription factor bHLH82 isoform X2
TrEMBLA0A2K3PGR60.0A0A2K3PGR6_TRIPR; Transcription factor bHLH66-like protein (Fragment)
STRINGAES925441e-146(Medicago truncatula)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24260.11e-31LJRHL1-like 1