PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA40520
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family bHLH
Protein Properties Length: 310aa    MW: 33912.9 Da    PI: 6.5873
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA40520genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH37.73.7e-12215260555
                                HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                        HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                                h+++Er RR+ri +++  L+el+P+a      K +Ka++L + ++Y+k Lq
  Tp57577_TGAC_v2_mRNA40520 215 HSIAERLRRERIAERMKALQELVPNA-----NKTDKASMLDEIIDYVKFLQ 260
                                99***********************8.....6******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474593.14E-17208270IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.52E-14208264No hitNo description
PROSITE profilePS5088817.39210259IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.4E-16212269IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.8E-9215260IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.2E-13216265IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 310 aa     Download sequence    Send to blast
MQPCSREMQS LNSLFNSSSS SEIPIPQLQN HSQIQINNNN DAFHNDDFLK QMLSNLPPSS  60
PWTLDPNNPK PLWDPNSDEN VTFPNYEEQH NNLSSKFRNH QITDKSAAAL MLLMPTAADS  120
GLLHMPADFD SSQNDVVNAS SLLQAGDGSV QALFNGFSGS LHGVAANQTH HFQPPQGQSF  180
GGGSVSATNQ APASGAPAQP RQKVRARRGQ ATDPHSIAER LRRERIAERM KALQELVPNA  240
NKTDKASMLD EIIDYVKFLQ VQVKVLSMSR LGGAAAVAPL VADMSSEVNF RTIFHFLSEF  300
TKVIVVHYL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1219224RLRRER
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA40520
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU4167621e-164EU416762.1 Trifolium repens clone CloverSSR-024_E04_012_1 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003610347.21e-154transcription factor bHLH82 isoform X1
TrEMBLA0A2K3PGR60.0A0A2K3PGR6_TRIPR; Transcription factor bHLH66-like protein (Fragment)
STRINGAES925441e-148(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF47783352
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24260.12e-31LJRHL1-like 1