PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Tp57577_TGAC_v2_mRNA40364 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
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Family | bHLH | ||||||||
Protein Properties | Length: 373aa MW: 40447.2 Da PI: 8.8276 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 29.8 | 1.1e-09 | 221 | 265 | 5 | 54 |
HHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 h+++Er RR+ri +++ L+el+P+ + K + a++L + v+Y+k L Tp57577_TGAC_v2_mRNA40364 221 HSIAERLRRERIAERIRALQELVPSvN------KTDRAAMLDEIVDYVKFL 265 99***********************55......****************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 4.97E-15 | 214 | 275 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 16.12 | 216 | 265 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.2E-14 | 218 | 275 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 4.2E-7 | 221 | 265 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 9.5E-11 | 222 | 271 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 373 aa Download sequence Send to blast |
MLGFSYGEVF LLLGATAALI GPKDLPIISR TAGRLAGRAV GYVQLARGQL DSVMQQSQAR 60 QVHKELQDTM AQLDAIRHEI RSISIISPGP LTRSLNNLDQ APISNGIVCN LCTNXXXXXX 120 XXXXXXXXXX XXXXXXXXXI KNGSLASSTE VEKIKDGLQL IVMPVSAENT GLLPNRGGAD 180 VKGSDITFHG QPMPTTVPTA PHPPAMRPRV RARRGQATDP HSIAERLRRE RIAERIRALQ 240 ELVPSVNKTD RAAMLDEIVD YVKFLRLQVK VLSMSRLGGA GAVAPLVTDI PLSSVEEEGS 300 ESGRNQPAWE KWSNDGTEKQ VAKLMEENVG AAMQFLQSKA LCIMPISLAS AIYQSQPSDN 360 SSIVKPETTP PP* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 225 | 230 | RLRRER |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Tp57577_TGAC_v2_mRNA40364 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018812362.1 | 1e-123 | PREDICTED: transcription factor UNE12-like | ||||
TrEMBL | A0A2K3MNS0 | 1e-130 | A0A2K3MNS0_TRIPR; Transcription factor UNE12-like protein | ||||
STRING | XP_004495148.1 | 1e-119 | (Cicer arietinum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G02590.3 | 4e-70 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Tp57577_TGAC_v2_mRNA40364 |