PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA40363
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family bHLH
Protein Properties Length: 373aa    MW: 40447.2 Da    PI: 8.8276
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA40363genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH29.81.1e-09221265554
                                HHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
                        HLH   5 hnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                                h+++Er RR+ri +++  L+el+P+ +      K + a++L + v+Y+k L
  Tp57577_TGAC_v2_mRNA40363 221 HSIAERLRRERIAERIRALQELVPSvN------KTDRAAMLDEIVDYVKFL 265
                                99***********************55......****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474594.97E-15214275IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.12216265IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.2E-14218275IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.2E-7221265IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003539.5E-11222271IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 373 aa     Download sequence    Send to blast
MLGFSYGEVF LLLGATAALI GPKDLPIISR TAGRLAGRAV GYVQLARGQL DSVMQQSQAR  60
QVHKELQDTM AQLDAIRHEI RSISIISPGP LTRSLNNLDQ APISNGIVCN LCTNXXXXXX  120
XXXXXXXXXX XXXXXXXXXI KNGSLASSTE VEKIKDGLQL IVMPVSAENT GLLPNRGGAD  180
VKGSDITFHG QPMPTTVPTA PHPPAMRPRV RARRGQATDP HSIAERLRRE RIAERIRALQ  240
ELVPSVNKTD RAAMLDEIVD YVKFLRLQVK VLSMSRLGGA GAVAPLVTDI PLSSVEEEGS  300
ESGRNQPAWE KWSNDGTEKQ VAKLMEENVG AAMQFLQSKA LCIMPISLAS AIYQSQPSDN  360
SSIVKPETTP PP*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1225230RLRRER
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA40363
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018812362.11e-123PREDICTED: transcription factor UNE12-like
TrEMBLA0A2K3MNS01e-130A0A2K3MNS0_TRIPR; Transcription factor UNE12-like protein
STRINGXP_004495148.11e-119(Cicer arietinum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G02590.34e-70bHLH family protein