PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Tp57577_TGAC_v2_mRNA39751 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
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Family | bHLH | ||||||||
Protein Properties | Length: 218aa MW: 23911.7 Da PI: 6.6795 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 33.8 | 6.3e-11 | 98 | 145 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++l+P + +k Ka +L + ++YI+sLq Tp57577_TGAC_v2_mRNA39751 98 SHSLAERARREKISERMKILQDLVPGC----NKVIGKALVLDEIINYIQSLQ 145 8*************************9....677*****************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 4.71E-18 | 92 | 164 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 2.51E-10 | 92 | 149 | No hit | No description |
PROSITE profile | PS50888 | 15.828 | 94 | 144 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 2.3E-18 | 94 | 165 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 2.7E-8 | 98 | 145 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.8E-10 | 100 | 150 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 218 aa Download sequence Send to blast |
MEAPLINDST FSSTNPSLSE IWPHFPPQNN NNKKRKLGLI AGSSQENNQP EPDTTSAVVE 60 PGNGGSSNNN SAEEPSSEPH PKQDYIHVRA RRGQATDSHS LAERARREKI SERMKILQDL 120 VPGCNKVIGK ALVLDEIINY IQSLQSQVEF LSMRLESVNS RLNMNPYIEC FPSKDVGAQP 180 FDLSGIIFGP QANRGYAQGS QPGWLHMQIT GGFNKAL* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that forms a ternary complex with RSS3 and TIFY11A/JAZ9 to negatively regulate jasmonate-responsive genes. {ECO:0000269|PubMed:23715469}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Tp57577_TGAC_v2_mRNA39751 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027332721.1 | 1e-104 | transcription factor BHLH094-like | ||||
Swissprot | Q69WS3 | 6e-68 | BH094_ORYSJ; Transcription factor BHLH094 | ||||
TrEMBL | A0A2K3PCB0 | 1e-143 | A0A2K3PCB0_TRIPR; Transcription factor bHLH79-like protein | ||||
STRING | GLYMA17G10290.1 | 1e-102 | (Glycine max) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G59640.1 | 1e-69 | BIG PETAL P |
Link Out ? help Back to Top | |
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Phytozome | Tp57577_TGAC_v2_mRNA39751 |