PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA39750
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family bHLH
Protein Properties Length: 218aa    MW: 23911.7 Da    PI: 6.6795
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA39750genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH33.86.3e-1198145455
                                HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                        HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                                +h+ +Er RR++i +++  L++l+P +    +k   Ka +L + ++YI+sLq
  Tp57577_TGAC_v2_mRNA39750  98 SHSLAERARREKISERMKILQDLVPGC----NKVIGKALVLDEIINYIQSLQ 145
                                8*************************9....677*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474594.71E-1892164IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.51E-1092149No hitNo description
PROSITE profilePS5088815.82894144IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.3E-1894165IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.7E-898145IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.8E-10100150IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 218 aa     Download sequence    Send to blast
MEAPLINDST FSSTNPSLSE IWPHFPPQNN NNKKRKLGLI AGSSQENNQP EPDTTSAVVE  60
PGNGGSSNNN SAEEPSSEPH PKQDYIHVRA RRGQATDSHS LAERARREKI SERMKILQDL  120
VPGCNKVIGK ALVLDEIINY IQSLQSQVEF LSMRLESVNS RLNMNPYIEC FPSKDVGAQP  180
FDLSGIIFGP QANRGYAQGS QPGWLHMQIT GGFNKAL*
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that forms a ternary complex with RSS3 and TIFY11A/JAZ9 to negatively regulate jasmonate-responsive genes. {ECO:0000269|PubMed:23715469}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA39750
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027332721.11e-104transcription factor BHLH094-like
SwissprotQ69WS36e-68BH094_ORYSJ; Transcription factor BHLH094
TrEMBLA0A2K3PCB01e-143A0A2K3PCB0_TRIPR; Transcription factor bHLH79-like protein
STRINGGLYMA17G10290.11e-102(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF117134105
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G59640.11e-69BIG PETAL P