PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA39684
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family HD-ZIP
Protein Properties Length: 334aa    MW: 38317.3 Da    PI: 4.6012
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA39684genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox58.79.8e-1999152356
                                --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
                   Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                                k+++++ +q++ Le+ Fe ++++  +++ ++Ak lgL+ rqV +WFqNrRa++k
  Tp57577_TGAC_v2_mRNA39684  99 KKRRLSVDQVQFLEKSFEVENKLEPDRKIKIAKDLGLQPRQVAIWFQNRRARWK 152
                                566899***********************************************9 PP
2HD-ZIP_I/II125.32.8e-4098190193
                HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekev 84 
                                ekkrrls +qv++LE+sFe e+kLep+rK ++a++Lglqprqva+WFqnrRAR+ktkqlEkdye+L ++y++lk++ +++ ke+
  Tp57577_TGAC_v2_mRNA39684  98 EKKRRLSVDQVQFLEKSFEVENKLEPDRKIKIAKDLGLQPRQVAIWFQNRRARWKTKQLEKDYETLNDSYKSLKTDYDNILKEK 181
                                69********************************************************************************** PP

                HD-ZIP_I/II  85 eeLreelke 93 
                                e+L++e+++
  Tp57577_TGAC_v2_mRNA39684 182 ERLQAEVAS 190
                                ****99875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.4E-1886156IPR009057Homeodomain-like
PROSITE profilePS5007116.89294154IPR001356Homeobox domain
SMARTSM003894.6E-1997158IPR001356Homeobox domain
CDDcd000864.93E-1699155No hitNo description
PfamPF000466.6E-1699152IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.607.2E-19106153IPR009057Homeodomain-like
PRINTSPR000315.7E-5125134IPR000047Helix-turn-helix motif
PROSITE patternPS000270129152IPR017970Homeobox, conserved site
PRINTSPR000315.7E-5134150IPR000047Helix-turn-helix motif
PfamPF021834.3E-16154195IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 334 aa     Download sequence    Send to blast
MAGGRVFTNG PANNISNMNM LFHNQQQQQI PRANNTSQQP LDSLFLSSSS SVPFFGSRSM  60
VSFEDVQGGK RCNRSFFTGF DLDENGADEM DEYFHQSEKK RRLSVDQVQF LEKSFEVENK  120
LEPDRKIKIA KDLGLQPRQV AIWFQNRRAR WKTKQLEKDY ETLNDSYKSL KTDYDNILKE  180
KERLQAEVAS LSEKVVAKEK LQEGKFKQGE SETKELLQKP LMNSVSDEGE GSKLSIVETC  240
NKIEDISSAR SDILDCDSPR YTDGVLETCD SSYVFEHEYQ SDLSSQDEED NLLPPYNIFT  300
KLEDVNYSDP PHGSSSFGFQ EEDHHTLWPW SNY*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1146154RRARWKTKQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA39684
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003608986.11e-171homeobox-leucine zipper protein HAT5
TrEMBLA0A2Z6NS680.0A0A2Z6NS68_TRISU; Uncharacterized protein
STRINGAES911831e-171(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15003499
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01470.18e-43homeobox 1