PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA39371
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family MYB_related
Protein Properties Length: 542aa    MW: 62886 Da    PI: 9.7266
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA39371genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding27.19.8e-09484528345
                                SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHH CS
            Myb_DNA-binding   3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwq 45 
                                 W++  +  lv+a k ++++   +W+++++ ++ g+t +qck ++ 
  Tp57577_TGAC_v2_mRNA39371 484 VWSAVQERALVQALKTFPKEanqRWERVSAAVP-GKTVNQCKKKFA 528
                                6********************************.********9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF465651.7E-1870173IPR001623DnaJ domain
Gene3DG3DSA:1.10.287.1101.1E-1591173IPR001623DnaJ domain
SMARTSM002713.9E-1596171IPR001623DnaJ domain
CDDcd062576.71E-1197168IPR001623DnaJ domain
PROSITE profilePS5007615.71797179IPR001623DnaJ domain
PfamPF002263.8E-1497173IPR001623DnaJ domain
PRINTSPR006254.3E-7102120IPR001623DnaJ domain
PRINTSPR006254.3E-7120135IPR001623DnaJ domain
PRINTSPR006254.3E-7151171IPR001623DnaJ domain
SuperFamilySSF466899.36E-9480529IPR009057Homeodomain-like
PROSITE profilePS512939.172480535IPR017884SANT domain
Gene3DG3DSA:1.10.10.601.3E-5481528IPR009057Homeodomain-like
SMARTSM007173.2E-9481533IPR001005SANT/Myb domain
PfamPF002492.2E-7484530IPR001005SANT/Myb domain
CDDcd001678.61E-7485531No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 542 aa     Download sequence    Send to blast
MAVHTKYRLI TYSPEIVDGK PIFVSSNCLP AKALKYEPAG HSFHSAALKL MGVNEEKDNK  60
DDNKKVVGDK EQAYLPTDSY SSKSKKKSGD KDKQQQDHYA LLGLSHLRYL ATEDQIRKSY  120
RDAALRFHPD KQAALLLAEE TEAAKEAKKV EIETHFLAIQ EAYEVLVDPT KRXXXXXXXX  180
XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX  240
XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX  300
XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX  360
XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX  420
XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXTNN ISSEESQGVS  480
KQEVWSAVQE RALVQALKTF PKEANQRWER VSAAVPGKTV NQCKKKFAMM KENFRNKKTA  540
V*
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA39371
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF60833348
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G11450.16e-38DnaJ domain ;Myb-like DNA-binding domain