PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Tp57577_TGAC_v2_mRNA39292 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
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Family | ERF | ||||||||
Protein Properties | Length: 177aa MW: 19957.3 Da PI: 6.2361 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 49.8 | 8.6e-16 | 18 | 66 | 2 | 54 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkle 54 + kGVr++k +g+Wv+eIr+p g + r +lg++ t e Aa a++ a +l+ Tp57577_TGAC_v2_mRNA39292 18 KLKGVRRRK-WGKWVSEIRVP---G-TqERLWLGTYATREAAAVAHDVAVYCLK 66 78****998.**********8...3.35*********************99986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 5.01E-15 | 17 | 78 | No hit | No description |
SuperFamily | SSF54171 | 2.22E-16 | 18 | 77 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 2.5E-9 | 18 | 65 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 20.732 | 18 | 77 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.9E-23 | 18 | 83 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.8E-7 | 19 | 30 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.4E-24 | 19 | 78 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.8E-7 | 41 | 57 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005737 | Cellular Component | cytoplasm | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 177 aa Download sequence Send to blast |
MNWIGSSSSS TSHGNDKKLK GVRRRKWGKW VSEIRVPGTQ ERLWLGTYAT REAAAVAHDV 60 AVYCLKRPST LDKLNFPEIL SSYCIQQRDH LMSPRSVQKV ASDIAMDVDA RNIARETTMI 120 NQSTHHMNEN QQVHNVVADD VFWWEGLVDG DDLSLQGVTQ VSSQQEDLNI SIEDYL* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 19 | 25 | KGVRRRK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00158 | DAP | Transfer from AT1G22810 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Tp57577_TGAC_v2_mRNA39292 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CU469552 | 3e-94 | CU469552.2 Medicago truncatula chromosome 5 clone mth2-190a9, COMPLETE SEQUENCE. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003610945.1 | 9e-83 | ethylene-responsive transcription factor ERF020 | ||||
Swissprot | Q9C9I8 | 4e-37 | ERF20_ARATH; Ethylene-responsive transcription factor ERF020 | ||||
TrEMBL | A0A2K3M3A0 | 1e-128 | A0A2K3M3A0_TRIPR; Ethylene-responsive transcription factor erf020-like protein | ||||
STRING | AES93903 | 4e-82 | (Medicago truncatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5489 | 30 | 54 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G22810.1 | 2e-39 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | Tp57577_TGAC_v2_mRNA39292 |
Publications ? help Back to Top | |||
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