PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA3916
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family bHLH
Protein Properties Length: 358aa    MW: 40477.4 Da    PI: 4.3565
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA3916genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH32.51.5e-102833231055
                               HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                       HLH  10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                               r+RR+riN+++  L+ l+P+      +K++ +++Le+Av+Y+k Lq
  Tp57577_TGAC_v2_mRNA3916 283 RKRRERINERLRILQNLVPNG-----TKVDISTMLEEAVNYVKFLQ 323
                               9******************97.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474592.09E-14273338IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.288273322IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.6E-12278333IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.1E-11279328IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.80E-11282327No hitNo description
PfamPF000108.7E-8283323IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 358 aa     Download sequence    Send to blast
MEPIVGAFPD GEWDFFRKMF ASEDHEYYSQ QFLDQNSLLL GEDDGLNNVT QSTFYSSENE  60
CMFYSFDHIS NSNYISQSQE NSYNSNSSAS DDTNQYFSYP NQVLLENNVD TCKSMDENFF  120
ASFVTPFNEI VMEENVKLNE DAIGSDDHIL EKNDYTTQLM EHVDFPNKNE LQMQLKRKLD  180
VIEVEEKINK KSENPKKKSR VSKDGQGCMK NARSKNNLKK VASNEEIAEE IDNGGSNGNS  240
SSSNISEDEN GSQENSGGTT LNSNGKTRAS RGSATDPQSL YARKRRERIN ERLRILQNLV  300
PNGTKVDIST MLEEAVNYVK FLQVQIKLLS SDDMWMYAPL AYNGLDIGLN LNNSLPL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA3916
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1405481e-128AC140548.11 Medicago truncatula clone mth2-12n15, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003589071.21e-165transcription factor bHLH85
TrEMBLA0A2Z6N6W70.0A0A2Z6N6W7_TRISU; Uncharacterized protein
STRINGAES593221e-161(Medicago truncatula)
STRINGAES593441e-161(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF80733121
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G14760.13e-41bHLH family protein