PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA39132
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family MYB_related
Protein Properties Length: 271aa    MW: 30362 Da    PI: 6.8639
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA39132genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding56.18.6e-183580148
                               TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
            Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                               rg++T eE++l +++++ lG++ W++Ia+ ++ gRt++++k++w+++l
  Tp57577_TGAC_v2_mRNA39132 35 RGPFTSEEEKLVIQLHAILGNR-WAAIASQLP-GRTDNEIKNFWNTHL 80
                               89********************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500904.171629IPR017877Myb-like domain
SuperFamilySSF466893.42E-231692IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.604.8E-111641IPR009057Homeodomain-like
PROSITE profilePS5129426.2683084IPR017930Myb domain
SMARTSM007171.6E-173482IPR001005SANT/Myb domain
PfamPF002491.6E-163580IPR001005SANT/Myb domain
CDDcd001671.47E-123780No hitNo description
Gene3DG3DSA:1.10.10.604.1E-234281IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 271 aa     Download sequence    Send to blast
LSLKKINIIL LSGLLRCGKS CRLRWTNYLR PDIKRGPFTS EEEKLVIQLH AILGNRWAAI  60
ASQLPGRTDN EIKNFWNTHL KKRLKSMGIN PETHEPVASS SYPNHKSHAS ISTRHMAQWE  120
SARLEAEARL SIESSSHFNN NNPNSITKTD SSSSSDYFLR IWNSEVGDAF RNVNKITSCC  180
QSPISAGSLS TNKCDSVIAE LASNNPISNS VKEEFEWKNY KFCAEDLILG YDSSSSNDMD  240
DSSDTALQLL LDFPMNNDMN FLENSFAFSL *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-21168440108B-MYB
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17985LKKRLKS
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that may play a role in flower development by repressing ANT (PubMed:19232308). Regulates the transition of meristem identity from vegetative growth to flowering. Acts downstream of LFY and upstream of AP1. Directly activates AP1 to promote floral fate. Together with LFY and AP1 may constitute a regulatory network that contributes to an abrupt and robust meristem identity transition (PubMed:21750030). {ECO:0000269|PubMed:19232308, ECO:0000269|PubMed:21750030}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA39132
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1238991e-105AC123899.15 Medicago truncatula clone mth2-33n6, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003623894.11e-148transcription factor MYB41
SwissprotQ9M2D91e-87MYB17_ARATH; Transcription factor MYB17
TrEMBLA0A396H0L91e-150A0A396H0L9_MEDTR; Putative transcription factor MYB-HB-like family
STRINGAES801121e-148(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF23313280
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G61250.16e-79myb domain protein 17