PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA38928
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family ERF
Protein Properties Length: 234aa    MW: 26335.5 Da    PI: 4.7348
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA38928genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.81.3e-1851102155
                        AP2   1 sgykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                                + y+G+r++  +++Wv+e+r+p   + k++r++lg++ t+e+Aa+a++ a+++l+g
  Tp57577_TGAC_v2_mRNA38928  51 PVYRGIRRRN-NNKWVCEVRVP---NdKSTRIWLGTYPTPEMAARAHDVAALALRG 102
                                68*****887.8*********9...6678*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008474.4E-1351102IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.3E-3052112IPR001471AP2/ERF domain
SMARTSM003803.0E-2452116IPR001471AP2/ERF domain
PROSITE profilePS5103221.85252110IPR001471AP2/ERF domain
SuperFamilySSF541711.7E-2052112IPR016177DNA-binding domain
PRINTSPR003672.5E-75364IPR001471AP2/ERF domain
CDDcd000185.29E-2853112No hitNo description
PRINTSPR003672.5E-77692IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 234 aa     Download sequence    Send to blast
MMKSSSSLDE SNYPSYSTSS SEASCSEEFL LASEQPKKKA GRRKFKETRH PVYRGIRRRN  60
NNKWVCEVRV PNDKSTRIWL GTYPTPEMAA RAHDVAALAL RGKSACLNFA DSAWRLTLPV  120
STDPKEIRKM AAEAALAFAV EDGNPNTEQL VITDCDVTDV NSIGVMEDDD KILQGLCVEV  180
PELEQDMLHD WIRNMADEPL QSPACSFIRS YDRDHWNNVD VDVEEVSLWS FTI*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates abscisic acid- and dehydration-inducible transcription. CBF/DREB1 factors play a key role in freezing tolerance and cold acclimation. {ECO:0000269|PubMed:11798174, ECO:0000269|PubMed:12376631}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA38928
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By high-salt stress, drought stress and abscisic acid (ABA) treatment. {ECO:0000269|PubMed:11798174, ECO:0000269|PubMed:12376631}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013457668.17e-98dehydration-responsive element-binding protein 1E
SwissprotQ9FJ932e-57DRE1D_ARATH; Dehydration-responsive element-binding protein 1D
TrEMBLA0A2K3PRE11e-149A0A2K3PRE1_TRIPR; Dehydration-responsive element-binding protein 1f-like
STRINGXP_004515794.14e-95(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF24333224
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51990.14e-41C-repeat-binding factor 4
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Guttikonda SK, et al.
    Overexpression of AtDREB1D transcription factor improves drought tolerance in soybean.
    Mol. Biol. Rep., 2014. 41(12): p. 7995-8008
    [PMID:25192890]
  3. Zhang T, et al.
    Overexpression of a NF-YB3 transcription factor from Picea wilsonii confers tolerance to salinity and drought stress in transformed Arabidopsis thaliana.
    Plant Physiol. Biochem., 2015. 94: p. 153-64
    [PMID:26093308]
  4. Carlow CE, et al.
    Nuclear localization and transactivation by Vitis CBF transcription factors are regulated by combinations of conserved amino acid domains.
    Plant Physiol. Biochem., 2017. 118: p. 306-319
    [PMID:28675818]
  5. Li B, et al.
    Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis.
    Plant Cell, 2018. 30(1): p. 178-195
    [PMID:29317470]