PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA38663
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family GRAS
Protein Properties Length: 502aa    MW: 57824.8 Da    PI: 4.44
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA38663genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS2622e-801304891373
                       GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdg.dp.mqRlaayfteALaarlarsvselykalppsetseknsseelaalk 82 
                                lv+lLl  Aeav+s++++la+ ++++l++ +s ++ d+ ++Rl  +ft++L  + ++     ++ +++ + s  ++++++ +++
  Tp57577_TGAC_v2_mRNA38663 130 LVDLLLIGAEAVESQNMTLASDIIEKLNNASSLEKgDSlLNRLCPFFTRGLYYKTTN-----AAEFHCDHVS--TQTSTFCVFQ 206
                                57899999**********************88765465279*************999.....4445555554..4555678999 PP

                       GRAS  83 lfsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLa 166
                                +++e+sP++kf+h+taNqaIlea++g+e+vH+iDfdi++G+QWp+L+  +a R++ + slR+T++   +++s+ ++++tg+rL+
  Tp57577_TGAC_v2_mRNA38663 207 ILQELSPYVKFAHFTANQAILEATDGAEQVHVIDFDIMEGIQWPSLMVDFAMRKN-TTSLRVTAITV-DQQSAASVQQTGRRLK 288
                                *****************************************************65.59********9.6689************ PP

                       GRAS 167 kfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqe....a 246
                                +fA++++ pf f+++++ + ed++  eL    g +l+Vn+++  + ++++s sl +   ++L+ v++lsP+++v+ve+e    +
  Tp57577_TGAC_v2_mRNA38663 289 EFADSINFPFMFDTMMMVSEEDFQGIEL----GGTLIVNCMI-HQWMPNRSFSLVK---TFLNGVRKLSPRLFVLVEEElfnfS 364
                                **************86666666655555....99*******9.5667888899988...********************87755 PP

                       GRAS 247 dhnsesFlerflealeyysalfdsl.eaklpreseerikvErellgreivnvvacegaerrerhetlekWrerl..eeaGFkpv 327
                                 + s sF+e  +eal++y a+ dsl ++  ++++ e + +E+e+lg++i + v +   er er      W+er+  +  G+k v
  Tp57577_TGAC_v2_mRNA38663 365 RLKSMSFVEFYCEALHHYIAVSDSLvSTLWSSHKMELNLIEKEVLGNRILDSVRQFPCERGERIL----WEERFfySLKGYKRV 444
                                56999********************56666666688899********************999998....****944569***** PP

                       GRAS 328 plsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373
                                 +s+ + +qakll++ ++ +gy v+ e+  l l+Wk+rpL+svS W
  Tp57577_TGAC_v2_mRNA38663 445 GMSTCNISQAKLLVSLFG-KGYWVQFENCRLALCWKSRPLTSVSIW 489
                                ******************.9************************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098535.182104471IPR005202Transcription factor GRAS
PfamPF035147.1E-78130489IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 502 aa     Download sequence    Send to blast
MNIMDYEQFD FSFIPPYINQ LHECSLENAS TFQTEDLLSP NTILDEILFD QDQLEDLLSP  60
NTILDEFFVQ DESMEALLQQ QTDHEFDTIN HDQTMPLGNE SCHQVTEKGR KNDDSYWKVV  120
QEELMEETSL VDLLLIGAEA VESQNMTLAS DIIEKLNNAS SLEKGDSLLN RLCPFFTRGL  180
YYKTTNAAEF HCDHVSTQTS TFCVFQILQE LSPYVKFAHF TANQAILEAT DGAEQVHVID  240
FDIMEGIQWP SLMVDFAMRK NTTSLRVTAI TVDQQSAASV QQTGRRLKEF ADSINFPFMF  300
DTMMMVSEED FQGIELGGTL IVNCMIHQWM PNRSFSLVKT FLNGVRKLSP RLFVLVEEEL  360
FNFSRLKSMS FVEFYCEALH HYIAVSDSLV STLWSSHKME LNLIEKEVLG NRILDSVRQF  420
PCERGERILW EERFFYSLKG YKRVGMSTCN ISQAKLLVSL FGKGYWVQFE NCRLALCWKS  480
RPLTSVSIWV PTDYIMSERV K*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A1e-3313849127380Protein SCARECROW
5b3h_A1e-3313849126379Protein SCARECROW
5b3h_D1e-3313849126379Protein SCARECROW
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA38663
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003630217.10.0nodulation-signaling pathway 2 protein-like
TrEMBLG7LD660.0G7LD66_MEDTR; GRAS family transcription factor
STRINGAET046930.0(Medicago truncatula)
STRINGAET047050.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF131482130
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G08250.13e-47GRAS family protein