PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Tp57577_TGAC_v2_mRNA3844 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
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Family | HSF | ||||||||
Protein Properties | Length: 235aa MW: 27117.6 Da PI: 7.8594 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 112.8 | 2.3e-35 | 23 | 113 | 2 | 101 |
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksF 86 Fl k+y ++ed++++++isw+e+g++fvv+++ efa+++Lp+ Fkhsnf+SFvRQLn+YgF+kv +++ weF +++F Tp57577_TGAC_v2_mRNA3844 23 FLLKTYMLVEDPATDDVISWNEEGTAFVVWQPAEFARDLLPTLFKHSNFSSFVRQLNTYGFRKVATNR---------WEFCNEKF 98 9****************************************************************999.........******** PP XXXXXXXXXXXXXXX CS HSF_DNA-bind 87 kkgkkellekikrkk 101 kkg++ell++i+r++ Tp57577_TGAC_v2_mRNA3844 99 KKGERELLSEIRRRR 113 *************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00415 | 7.6E-52 | 19 | 112 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene3D | G3DSA:1.10.10.10 | 4.0E-37 | 20 | 112 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SuperFamily | SSF46785 | 4.15E-33 | 20 | 112 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
PRINTS | PR00056 | 4.9E-19 | 23 | 46 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Pfam | PF00447 | 1.9E-31 | 23 | 112 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 4.9E-19 | 61 | 73 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PROSITE pattern | PS00434 | 0 | 62 | 86 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 4.9E-19 | 74 | 86 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0046686 | Biological Process | response to cadmium ion | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 235 aa Download sequence Send to blast |
MEGVVISEKG LLECGRKCTP SPFLLKTYML VEDPATDDVI SWNEEGTAFV VWQPAEFARD 60 LLPTLFKHSN FSSFVRQLNT YGFRKVATNR WEFCNEKFKK GERELLSEIR RRRAWSNNKQ 120 HHTIQNQDSD EDQRSSSTSS SSGYINLVDE NKRLKKENAV LNSELTSMKW KCKELVDLVS 180 IYNQKKEEDE ANENDKRPML FGVRLDVQQG DRRIKRNIAE IGENASILLS QSCK* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ldu_A | 3e-20 | 23 | 112 | 20 | 120 | Heat shock factor protein 1 |
5d5u_B | 3e-20 | 23 | 112 | 29 | 129 | Heat shock factor protein 1 |
5d5v_B | 3e-20 | 23 | 112 | 29 | 129 | Heat shock factor protein 1 |
5d5v_D | 3e-20 | 23 | 112 | 29 | 129 | Heat shock factor protein 1 |
5d5w_B | 2e-20 | 21 | 112 | 2 | 104 | Putative transcription factor |
5d5x_B | 2e-20 | 21 | 112 | 2 | 104 | Putative transcription factor |
5d5x_E | 2e-20 | 21 | 112 | 2 | 104 | Putative transcription factor |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE). |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00305 | DAP | Transfer from AT2G41690 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Tp57577_TGAC_v2_mRNA3844 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC236835 | 1e-134 | AC236835.2 Medicago truncatula strain A17 clone mte1-66f19, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003625136.1 | 1e-146 | heat stress transcription factor B-3 | ||||
Swissprot | O22230 | 5e-71 | HSFB3_ARATH; Heat stress transcription factor B-3 | ||||
TrEMBL | A0A2Z6NEB1 | 1e-154 | A0A2Z6NEB1_TRISU; Uncharacterized protein | ||||
STRING | AES81354 | 1e-146 | (Medicago truncatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1592 | 33 | 95 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G41690.1 | 4e-60 | heat shock transcription factor B3 |
Link Out ? help Back to Top | |
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Phytozome | Tp57577_TGAC_v2_mRNA3844 |