PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA38349
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family M-type_MADS
Protein Properties Length: 340aa    MW: 39028.4 Da    PI: 9.5944
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA38349genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF79.52.3e-251563250
                               ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
                     SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                               ri+n + rqvtfskRr+g++KKA+EL +LCda+v + ifsstgklyey+
  Tp57577_TGAC_v2_mRNA38349 15 RIDNCTSRQVTFSKRRKGLIKKAKELAILCDAQVGLFIFSSTGKLYEYA 63
                               8***********************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006630.053666IPR002100Transcription factor, MADS-box
SMARTSM004321.1E-36665IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.09E-26777IPR002100Transcription factor, MADS-box
CDDcd002652.95E-347116No hitNo description
PRINTSPR004044.0E-26828IPR002100Transcription factor, MADS-box
PfamPF003191.3E-221562IPR002100Transcription factor, MADS-box
PRINTSPR004044.0E-262843IPR002100Transcription factor, MADS-box
PRINTSPR004044.0E-264364IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 340 aa     Download sequence    Send to blast
MTCKNMGRGK IVIRRIDNCT SRQVTFSKRR KGLIKKAKEL AILCDAQVGL FIFSSTGKLY  60
EYANTRFNSF LNFNLQYKLY GSIMIDIFFL KCDYSLYCDS MKSVIERYNS CKEDQQVTNP  120
DSELKFWQRE ADILRQQLQA LQENHQYNLS SNLFSVFFSS SILLIKPFAN DGRTALRFEY  180
PKPTRFREST GTESPRSSHE KGRLTTYREN SDRRNPRAEP KGNSNFSAVA FTIFRLKILQ  240
NLLNFLFRFP HIQGSLIHQE NVELYKKVSL IQQENTQLHK KVYGTSDTAA TATSKNAFGQ  300
FPYGVFEGGD CPQTLFNLQL CLPEQEQYCE TSGSGSATK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A3e-16681173MEF2C
5f28_B3e-16681173MEF2C
5f28_C3e-16681173MEF2C
5f28_D3e-16681173MEF2C
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA38349
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1260103e-65AC126010.13 Medicago truncatula clone mth2-20e4, complete sequence.
GenBankEU3066593e-65EU306659.1 Medicago truncatula zinc finger protein, GH1 protein, hydroxyproline-rich glycoprotein, and bHLH transcription factor genes, complete cds; LTR-retrotransposon, complete sequence; beta-D-xylosidase, glycine-rich protein, putative protein, ABC transporter, NORK, BRICK1, oligopeptidase A, serine-hydroxymethyltransferase, and MADS-box protein genes, complete cds; tRNA-Ile genes, complete sequence; lectin gene, complete cds; LTR-retrotransposon, complete sequence; lectin genes, complete cds; and hypothetical protein gene, partial cds.
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF8912560
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37940.12e-49AGAMOUS-like 21