PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Tp57577_TGAC_v2_mRNA38206 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
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Family | AP2 | ||||||||
Protein Properties | Length: 495aa MW: 54868.5 Da PI: 6.6762 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 34.9 | 3.7e-11 | 151 | 207 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpseng....kr.krfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV++++++grW+++I+d+ g k + f+ta Aa+a+++a+ k++g Tp57577_TGAC_v2_mRNA38206 151 SQYRGVTFYRRTGRWESHIWDC---GkqvyLGeKATQHRGFDTAHAAARAYDRAAIKFRG 207 78*******************5...22322114555555699999************997 PP | |||||||
2 | AP2 | 40.2 | 8.6e-13 | 250 | 300 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV+ +k grW+A+ + +k+++lg f+++ +Aa+a+++a+ k +g Tp57577_TGAC_v2_mRNA38206 250 SKYRGVTLHK-CGRWEARMGQF--L-GKKYIYLGLFDSEIDAARAYDKAAIKCNG 300 89********.7******5553..2.26**********99**********99776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 3.07E-12 | 151 | 217 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 3.6E-5 | 151 | 207 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 14.895 | 152 | 215 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 6.9E-13 | 152 | 216 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 5.3E-28 | 152 | 221 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.9E-16 | 250 | 309 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 5.25E-25 | 250 | 310 | No hit | No description |
Pfam | PF00847 | 3.9E-8 | 250 | 300 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.2E-15 | 251 | 309 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 5.9E-31 | 251 | 314 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 15.343 | 251 | 308 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.1E-6 | 252 | 263 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.1E-6 | 290 | 310 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 495 aa Download sequence Send to blast |
MLDLNLNAHS AFDNYTFPLS SATAQMESSG SFDSSVINTA DTEDSSSYGD AYAYNFAILN 60 NNTNNNSSVE NGSISGELQV QHSGAGESGV RTIQLFPANE SGLISPSENR GWMKMNFPSD 120 HHGGVPEHTV VVAPRPQQVK KSRRGPRSRS SQYRGVTFYR RTGRWESHIW DCGKQVYLGE 180 KATQHRGFDT AHAAARAYDR AAIKFRGVDA DINFNVSDYD EDIKQMSNFT KEEFVHILRR 240 QSTGFSRGSS KYRGVTLHKC GRWEARMGQF LGKKYIYLGL FDSEIDAARA YDKAAIKCNG 300 REAVTNFEAS TYEGELISHC DNADSKQNLD LNLAIAPPSN SDVQMMNMQH NGSGLQVQRS 360 WDDMPVDKSV MFEDSGSRSV NVQSPYGFSI ASENQPPVWS GSNYFPMCKE RAIENRMESS 420 PVPNWAWQLQ SPYNNGSTLI PPNFSAAASS GFPSNTTIPS AADSQIHFAN MNFHPHFPPQ 480 MTNSSTIPPF YCRS* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor (By similarity). Involved in spikelet transition. Together with SNB, controls synergistically inflorescence architecture and floral meristem establishment via the regulation of spatio-temporal expression of B- and E-function floral organ identity genes in the lodicules and of spikelet meristem genes. Prevents lemma and palea elongation as well as grain growth (By similarity). {ECO:0000250|UniProtKB:P47927, ECO:0000250|UniProtKB:Q84TB5}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Tp57577_TGAC_v2_mRNA38206 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP010291 | 2e-48 | AP010291.1 Lotus japonicus genomic DNA, chromosome 1, clone: LjT58D09, TM2058, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003625570.1 | 0.0 | floral homeotic protein APETALA 2 isoform X1 | ||||
Swissprot | B8AMA9 | 1e-102 | AP22_ORYSI; APETALA2-like protein 2 | ||||
TrEMBL | A0A2K3PDQ4 | 0.0 | A0A2K3PDQ4_TRIPR; Ethylene-responsive transcription factor rap2-7-like protein | ||||
STRING | AES81788 | 0.0 | (Medicago truncatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF10581 | 30 | 41 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G28550.3 | 1e-101 | related to AP2.7 |
Link Out ? help Back to Top | |
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Phytozome | Tp57577_TGAC_v2_mRNA38206 |