PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA38141
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family WRKY
Protein Properties Length: 416aa    MW: 46533.7 Da    PI: 8.8394
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA38141genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY1031.7e-32185240359
                                -SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                       WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                                DgynWrKYGqK+vkgse+prsYY+Ct+++Cpvkkkvers  d+++ ei+Y+geHnh 
  Tp57577_TGAC_v2_mRNA38141 185 DGYNWRKYGQKQVKGSEYPRSYYKCTHPNCPVKKKVERSF-DGEIAEIVYKGEHNHG 240
                                9***************************************.***************5 PP
2WRKY102.81.9e-32338395259
                                --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                       WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                                 Dg++WrKYGqK+vkg+++prsYYrCt  +C+v+k+ver+ +dpk +++tYeg+Hnhe
  Tp57577_TGAC_v2_mRNA38141 338 GDGFRWRKYGQKVVKGNPYPRSYYRCTNIKCNVRKHVERAIDDPKSFVTTYEGKHNHE 395
                                5********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.806.3E-30174242IPR003657WRKY domain
SuperFamilySSF1182904.97E-26180242IPR003657WRKY domain
SMARTSM007741.5E-36183241IPR003657WRKY domain
PfamPF031062.6E-25185239IPR003657WRKY domain
PROSITE profilePS5081123.583185242IPR003657WRKY domain
Gene3DG3DSA:2.20.25.806.9E-32323397IPR003657WRKY domain
PROSITE profilePS5081134.084332397IPR003657WRKY domain
SuperFamilySSF1182905.23E-28333397IPR003657WRKY domain
SMARTSM007741.2E-37337396IPR003657WRKY domain
PfamPF031062.0E-25339395IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009957Biological Processepidermal cell fate specification
GO:0010214Biological Processseed coat development
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 416 aa     Download sequence    Send to blast
MDIEEVERVV VAKPVASRPK CSTYKSFSEL LVGAINDTPP IASSQTTISA IRPKTVRFKP  60
TLNPSHAGSI SSQSYMDPKP DANQSLIYKP TAKFVSKTTV SLLANMGICS TNQQQSQQSV  120
ETNLQHLNHD KFRSNLSSNF HQNITIRKET YQQVTEPCKT AQQNMEEDQK ALTPSTMNAD  180
KPSYDGYNWR KYGQKQVKGS EYPRSYYKCT HPNCPVKKKV ERSFDGEIAE IVYKGEHNHG  240
KPQLQKRNAG AAQGSGMVSD GLVQDILNNN QNDRIEGRME NDVKASQPND SGLENSCGLS  300
GECVEGSKGF EAEEDDPRSK RRKNENQSNE GVDSEILGDG FRWRKYGQKV VKGNPYPRSY  360
YRCTNIKCNV RKHVERAIDD PKSFVTTYEG KHNHEMPLKN TTTTTLSSEK DSQAS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A1e-301853971577Probable WRKY transcription factor 4
2lex_A1e-301853971577Probable WRKY transcription factor 4
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA38141
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1861361e-168AC186136.3 Medicago truncatula chromosome 7 BAC clone mth2-5a14, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003625561.10.0WRKY transcription factor 44
RefseqXP_024625882.10.0WRKY transcription factor 44
RefseqXP_024625883.10.0WRKY transcription factor 44
RefseqXP_024625884.10.0WRKY transcription factor 44
TrEMBLA0A2Z6NHE10.0A0A2Z6NHE1_TRISU; Uncharacterized protein (Fragment)
STRINGAES817790.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF67903450
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37260.11e-105WRKY family protein