PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Tp57577_TGAC_v2_mRNA37928

Organism

Trifolium pratense

Taxonomic ID

57577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium

Family

Trihelix

Protein Properties

Length: 449aa MW: 50937.4 Da PI: 6.4368

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp57577_TGAC_v2_mRNA37928	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	82.9	4.3e-26	119	213	1	83
trihelix 1 rWtkqevlaLiearremeerlrrgk...........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.t 72 +Wt+++v++Li+a+++++e+ +++ +kk++W+++sk+m+erg+++sp+qC++k+++lnkrykk++++ +++ + Tp57577_TGAC_v2_mRNA37928 119 KWTDKMVRLLITAVSYIGEDGSSEGggggrkkfavlQKKGKWKSISKVMAERGYRVSPQQCEDKFNDLNKRYKKLNDMLGRGtS 202 7****************99975445667788888********************************************55 PP trihelix 73 sessstcpyfd 83 ++++++ +++d Tp57577_TGAC_v2_mRNA37928 203 CQVVENPALLD 213 88888887776 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	1.4E-23	117	242	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 449 aa Download sequence Send to blast
MEGNLAQGGI IQGVGGGGSF GGFDLPGSMR VNRPAQHTMN QHQAHPCQGS SVHSSIHDGF 60 PLTMGTLQNC DQTMSINEFG QGDRNKHSGS EEDEPEEGGD GHHQEGCRGK KGTPWQRVKW 120 TDKMVRLLIT AVSYIGEDGS SEGGGGGRKK FAVLQKKGKW KSISKVMAER GYRVSPQQCE 180 DKFNDLNKRY KKLNDMLGRG TSCQVVENPA LLDVIDFLNE KEKDDVRKIL NSKHLFYEEM 240 CSYHNCNRLH LPHDPALQRS LQIALRNRDD HDNDDVRRSY HDDHDEDDHD METDDHDEFE 300 ENFASHGDSR GIFGGLGGTS KRLRQGQGHE DATTFGNSIN CQEYHKSSHP HGQTVQTDGN 360 QALPENMRAA WLQKQWLDSR SVQLEEQKLQ IQVEMLELEK QRLKWERFSK KQDRELEKFK 420 LENDRMKIEN ERIALELKRK EIGGTSFN*

Sequence ? help Back to Top

Protein Sequence Length: 449 aa Download sequence Send to blast

MEGNLAQGGI IQGVGGGGSF GGFDLPGSMR VNRPAQHTMN QHQAHPCQGS SVHSSIHDGF  60
PLTMGTLQNC DQTMSINEFG QGDRNKHSGS EEDEPEEGGD GHHQEGCRGK KGTPWQRVKW  120
TDKMVRLLIT AVSYIGEDGS SEGGGGGRKK FAVLQKKGKW KSISKVMAER GYRVSPQQCE  180
DKFNDLNKRY KKLNDMLGRG TSCQVVENPA LLDVIDFLNE KEKDDVRKIL NSKHLFYEEM  240
CSYHNCNRLH LPHDPALQRS LQIALRNRDD HDNDDVRRSY HDDHDEDDHD METDDHDEFE  300
ENFASHGDSR GIFGGLGGTS KRLRQGQGHE DATTFGNSIN CQEYHKSSHP HGQTVQTDGN  360
QALPENMRAA WLQKQWLDSR SVQLEEQKLQ IQVEMLELEK QRLKWERFSK KQDRELEKFK  420
LENDRMKIEN ERIALELKRK EIGGTSFN*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp57577_TGAC_v2_mRNA37928

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027924747.1	0.0	uncharacterized protein LOC114182159
TrEMBL	A0A2K3P4P9	0.0	A0A2K3P4P9_TRIPR; Sequence-specific DNA binding transcription factor
STRING	XP_004516631.1	0.0	(Cicer arietinum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF5001	31	57

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G21200.1	1e-142	sequence-specific DNA binding transcription factors

Link Out ? help Back to Top
Phytozome	Tp57577_TGAC_v2_mRNA37928