PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA36953
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family B3
Protein Properties Length: 353aa    MW: 40929.2 Da    PI: 9.7117
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA36953genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B350.92.9e-16241333194
                                EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE...EEETTEEEE-TTHHHHHHHHT--TT-EEEEE CS
                         B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliy.rkksgryvltkGWkeFvkangLkegDfvvFk 83 
                                ff  ++++ + ++++l +p++f  +h +   e++  tl   + r+W+v l+  r k +++ lt+GW++F   n+Lk gD++vF 
  Tp57577_TGAC_v2_mRNA36953 241 FFACMIHKTYIERDMLAIPNEFGYTHLHRM-EGRNATLFIDQERTWNVDLKLtRSKHKQFRLTSGWSKFRAHNNLKLGDVCVFI 323
                                8899999****************9994443.444666667799*******994555555************************* PP

                                E-SSSEE..EE CS
                         B3  84 ldgrsefelvv 94 
                                l++  +++  +
  Tp57577_TGAC_v2_mRNA36953 324 LNK-CKGTVSF 333
                                876.5554444 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019362.94E-1111123IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.2E-914123IPR015300DNA-binding pseudobarrel domain
SMARTSM010190.03815125IPR003340B3 DNA binding domain
PROSITE profilePS508637.45848125IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.6E-16238339IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.92E-16239339IPR015300DNA-binding pseudobarrel domain
SMARTSM010192.0E-8241341IPR003340B3 DNA binding domain
PfamPF023621.6E-13241333IPR003340B3 DNA binding domain
PROSITE profilePS5086313.535241341IPR003340B3 DNA binding domain
CDDcd100176.46E-14241339No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 353 aa     Download sequence    Send to blast
MSSQELDHGS NGIHFLKIIL QSTLQQGKLK VPISFVRRHW KGITNPKVPI SFVRRHWKGM  60
TNPVTLSLPN LTEKKVFWEK TSDYDVWFCN GWKEFANYLS LSDSQCLVFQ YQGNSLFNVI  120
GFGKCGLEIK YPLNEASEEF EESDCSLKLI ENPSSLRSKR LKSSSSSYNV CKKIKINSKE  180
QKEFKDDKRI VQAQARFPKF KDMDNGEILK ILPGNSCDDL KERGLVLYEK VKKKFHCDKD  240
FFACMIHKTY IERDMLAIPN EFGYTHLHRM EGRNATLFID QERTWNVDLK LTRSKHKQFR  300
LTSGWSKFRA HNNLKLGDVC VFILNKCKGT VSFQVVIFSL EKDMSAPYFE GL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA36953
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024636868.11e-161B3 domain-containing protein REM8
TrEMBLA0A396IHE61e-159A0A396IHE6_MEDTR; Putative transcription factor B3-Domain family
STRINGAES918791e-158(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF140231017
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49475.16e-17B3 family protein