PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Tp57577_TGAC_v2_mRNA36621 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
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Family | MYB | ||||||||
Protein Properties | Length: 218aa MW: 24895.7 Da PI: 10.0417 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 27.4 | 8.1e-09 | 17 | 48 | 1 | 32 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg 32 +g W+++Ed++l+d+++++G +W+t ++ g Tp57577_TGAC_v2_mRNA36621 17 KGVWSKQEDQKLIDYINKHGEVCWSTLPQAAG 48 799*****************99****999888 PP | |||||||
2 | Myb_DNA-binding | 52.1 | 1.5e-16 | 94 | 138 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg++ ++E++l+v+++++lG++ W++Ia +++ gRt++++k++w+++ Tp57577_TGAC_v2_mRNA36621 94 RGNFGEDEEDLIVKLHALLGNR-WSLIAGRLP-GRTDNEVKNFWNSH 138 89********************.*********.***********987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 11.418 | 12 | 60 | IPR017930 | Myb domain |
SMART | SM00717 | 1.0E-8 | 16 | 90 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 2.05E-20 | 17 | 140 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 1.5E-6 | 17 | 48 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 9.6E-21 | 19 | 95 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 6.15E-7 | 20 | 88 | No hit | No description |
PROSITE profile | PS51294 | 24.93 | 89 | 143 | IPR017930 | Myb domain |
SMART | SM00717 | 6.0E-15 | 93 | 141 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 6.9E-15 | 94 | 138 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 4.47E-10 | 96 | 139 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 4.1E-25 | 96 | 144 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 218 aa Download sequence Send to blast |
MRKPSCDIKL DKNIKNKGVW SKQEDQKLID YINKHGEVCW STLPQAAGNS RMHVTLLFFI 60 TTLINLVSCS LGLLRCGKSC RLRWMNYLRP DLKRGNFGED EEDLIVKLHA LLGNRWSLIA 120 GRLPGRTDNE VKNFWNSHIR KKLIRKGINP NNHSVNHKIP PLQNQIMSNS LKYFGLKDIS 180 KNQTTKTHVD NDDKVSNATS DKDESYALLD LNLELSL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 1e-25 | 16 | 143 | 26 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Tp57577_TGAC_v2_mRNA36621 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KT699108 | 0.0 | KT699108.1 Trifolium repens MYB133 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020239347.1 | 8e-93 | transcription factor MYB3 | ||||
TrEMBL | A0A0Y0GNL0 | 1e-114 | A0A0Y0GNL0_TRIRP; MYB133 | ||||
STRING | XP_007157714.1 | 1e-88 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF264 | 34 | 221 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G09460.1 | 3e-64 | myb domain protein 6 |
Link Out ? help Back to Top | |
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Phytozome | Tp57577_TGAC_v2_mRNA36621 |