PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Tp57577_TGAC_v2_mRNA36392 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 143aa MW: 16341 Da PI: 9.8354 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 44.8 | 1.6e-14 | 5 | 44 | 4 | 43 |
-SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT CS SRF-TF 4 enksnrqvtfskRrngilKKAeELSvLCdaevaviifsst 43 ++s+r tf+kR++g++KK E+ +LC++e + iifs++ Tp57577_TGAC_v2_mRNA36392 5 IDNSKRRATFIKRKKGLIKKIDEITTLCGVEGCAIIFSQN 44 56788889******************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 2.5E-8 | 1 | 53 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00266 | 1.77E-22 | 1 | 76 | No hit | No description |
PROSITE profile | PS50066 | 14.129 | 1 | 44 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 1.83E-20 | 2 | 88 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.5E-14 | 4 | 44 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 143 aa Download sequence Send to blast |
LAYIIDNSKR RATFIKRKKG LIKKIDEITT LCGVEGCAII FSQNDPQPAI WPSPSGVHTV 60 LSRFSSLPEL EQSKKMQNQE SFLMGRIRKG EEQLNKLRNE NKKKELTQLM FQCLNAGQII 120 DDVNMNDVNG LYWLIEQNMK KN* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. Controls central cell differentiation during female gametophyte development. Required for the expression of DEMETER and DD46, but not for the expression of FIS2 (PubMed:16798889). Probable transcription factor that may function in the maintenance of the proper function of the central cell in pollen tube attraction (Probable). {ECO:0000269|PubMed:16798889, ECO:0000305|PubMed:26462908}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Tp57577_TGAC_v2_mRNA36392 |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004500454.1 | 7e-71 | agamous-like MADS-box protein AGL80 | ||||
Swissprot | Q9FJK3 | 3e-37 | AGL80_ARATH; Agamous-like MADS-box protein AGL80 | ||||
TrEMBL | A0A2K3JXP1 | 5e-74 | A0A2K3JXP1_TRIPR; Agamous-like mads-box protein agl80-like (Fragment) | ||||
STRING | XP_004500454.1 | 3e-70 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF452 | 33 | 154 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G48670.1 | 4e-34 | AGAMOUS-like 80 |
Link Out ? help Back to Top | |
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Phytozome | Tp57577_TGAC_v2_mRNA36392 |
Publications ? help Back to Top | |||
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