PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA35750
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family C3H
Protein Properties Length: 693aa    MW: 76003 Da    PI: 6.1334
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA35750genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH20.86.6e-07270290526
                                --SGGGGTS--TTTTT-SS-SS CS
                    zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                                +C+ f++ G C+ Gd+C +aHg
  Tp57577_TGAC_v2_mRNA35750 270 PCPEFRK-GSCSKGDSCDYAHG 290
                                8******.*************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.25.40.204.8E-1728177IPR020683Ankyrin repeat-containing domain
SuperFamilySSF484036.53E-1545155IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029716.30871151IPR020683Ankyrin repeat-containing domain
SMARTSM002480.04271101IPR002110Ankyrin repeat
PfamPF136377.7E-872130No hitNo description
CDDcd002044.54E-1073149No hitNo description
PROSITE profilePS5008811.674106141IPR002110Ankyrin repeat
SMARTSM002480.0019106138IPR002110Ankyrin repeat
SMARTSM003561.7E-4265291IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.7E-4269292IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.263270292IPR000571Zinc finger, CCCH-type
SMARTSM003568.6300323IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 693 aa     Download sequence    Send to blast
MCRKTCQTNL TMGYENGNKE GKHHEISSLL EFSAEDDVIG FKDAVENEGC DVNEVGLWYG  60
RSVCSKKLGY EERTPLMVAA MFGNLDVSAY ILGTGCVDVN RSCGSDGATA LHCAVAGGSA  120
ASAEIIKLLL DASADPSVVD ANGNRPVDLI VSGVNSIFNP RKRMLQALLE GTVGVADQTS  180
LAFPETIDVV DEYQRQDINT PRVSKDYPVD LSLPDIKNEL YSTDEFRMYT FKVKPCSRAY  240
SHDWTECPFV HPGENARRRD PRKYHYSCVP CPEFRKGSCS KGDSCDYAHG IFECWLHPAQ  300
YRTRLCKDES ACTRRVCFFA HRIEELRPLY ASTGSAIPSP RSYYSTASTL EMGSLSPMSL  360
GSPSVLIPPS STPPLTPSGA SSPVAATAMW QTQSNVSVPS LQLPKSRLKT GMTARDIDSD  420
IAMLRKQLMM DEISGLPSPS NWKNSMPNSP SFSVSLSDGH TTRELNRFSG VKPTNLEDIY  480
GSLDPSMLHK FHGISLDAAG SQLQSPTGIQ MRPNMNQQLQ NYSSGYSTSS RTGSPPYGFD  540
PSGELSAAAL NSRAAAFSKR SQSFIERNVA NRHSEHLSPV KPYAFPNWGS PDGKLNWTVQ  600
GEELNKLRKS SSFGFLSSNT PLNPAATRAQ ENDDEPDVSW VNSLVKDATP QESGRFSTED  660
QKRKLQYNLN NGTDAIPAWL EQLYIDQEQT VH*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00566DAPTransfer from AT5G58620Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA35750
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1351620.0AC135162.34 Medicago truncatula clone mth2-9b6, complete sequence.
GenBankCU6334720.0CU633472.5 M.truncatula DNA sequence from clone MTH2-59O10 on chromosome 3, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003615688.20.0zinc finger CCCH domain-containing protein 66
TrEMBLA0A2K3PNE10.0A0A2K3PNE1_TRIPR; Zinc finger CCCH domain-containing protein 66-like
STRINGAES986460.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17963490
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58620.10.0C3H family protein