PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA35731
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family MYB_related
Protein Properties Length: 70aa    MW: 7868.99 Da    PI: 10.4953
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA35731genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding32.52e-101256345
                               SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHH CS
            Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwq 45
                                W++  +  lv+a k ++++   +W+++++ ++ g+t +qck ++ 
  Tp57577_TGAC_v2_mRNA35731 12 VWSAVQERALVQALKTFPKEanqRWERVSAAVP-GKTVNQCKKKFA 56
                               6********************************.*********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512939.883863IPR017884SANT domain
SMARTSM007171.0E-8961IPR001005SANT/Myb domain
SuperFamilySSF466892.09E-101165IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.605.1E-71156IPR009057Homeodomain-like
PfamPF002494.2E-91258IPR001005SANT/Myb domain
CDDcd001673.55E-71359No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 70 aa     Download sequence    Send to blast
SEESQGVSEQ EVWSAVQERA LVQALKTFPK EANQRWERVS AAVPGKTVNQ CKKKFAMMKE  60
NFRNKKTAV*
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in the regulation of root hair development, possibly through auxin signaling. Its endoplasmic reticulum membrane localization is not compatible with its transcription factor activity in the nucleus. May be cleaved to target the nucleus. {ECO:0000269|PubMed:21477080}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA35731
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by auxin. {ECO:0000269|PubMed:21477080}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1453292e-80AC145329.35 Medicago truncatula clone mth2-8i21, complete sequence.
GenBankAC1633832e-80AC163383.4 Medicago truncatula strain A17 clone mte1-56p23, complete sequence.
GenBankBT0531902e-80BT053190.1 Medicago truncatula clone MTYFL_FM_FN_FO1G-C-13 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004500929.19e-38dnaJ homolog subfamily C member 2-like
SwissprotQ9ASQ22e-13MAMYB_ARATH; Transcription factor MAMYB
TrEMBLA0A2K3KC861e-40A0A2K3KC86_TRIPR; DnaJ subfamily c member 2-like protein (Fragment)
TrEMBLA0A392MUP92e-40A0A392MUP9_9FABA; DnaJ-like subfamily C member 2-like
TrEMBLA0A392N3X42e-41A0A392N3X4_9FABA; DnaJ-like subfamily C member 2-like
STRINGXP_004500929.14e-37(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3305322
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G11450.18e-26DnaJ domain ;Myb-like DNA-binding domain