PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA35724
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family MYB_related
Protein Properties Length: 226aa    MW: 24446 Da    PI: 10.1063
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA35724genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding301.2e-09168212345
                                SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHH CS
            Myb_DNA-binding   3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwq 45 
                                 W++  +  lv+a k ++++   +W+++a+ ++ g+t +qck ++ 
  Tp57577_TGAC_v2_mRNA35724 168 VWSAVQERALVQALKTFPKEanqRWERVAAAVP-GKTVNQCKKKFA 212
                                6********************************.********9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129310.252164219IPR017884SANT domain
SMARTSM007171.1E-8165217IPR001005SANT/Myb domain
SuperFamilySSF466892.57E-9168221IPR009057Homeodomain-like
PfamPF002492.8E-8168214IPR001005SANT/Myb domain
CDDcd001677.09E-8169215No hitNo description
Gene3DG3DSA:1.10.10.605.0E-6169212IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 226 aa     Download sequence    Send to blast
MAVHTKYRLI TYSPEIVDGK PIFVSSNCLP AKAWEVVSEY IGTGRSVEEI LKATKTVLLQ  60
KPDTAKAFDT FLEKRKPAAQ SIASPLSTRE ELEGVSIPAT TPENSPAFST TTTPTTASIP  120
TPVATTKTTP TPVATTKTTP TAPTMTTTTA TKNIINSEES QGVSELEVWS AVQERALVQA  180
LKTFPKEANQ RWERVAAAVP GKTVNQCKKK FAMMKENFRN KKTAV*
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA35724
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1453292e-86AC145329.35 Medicago truncatula clone mth2-8i21, complete sequence.
GenBankAC1633832e-86AC163383.4 Medicago truncatula strain A17 clone mte1-56p23, complete sequence.
GenBankBT0531902e-86BT053190.1 Medicago truncatula clone MTYFL_FM_FN_FO1G-C-13 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013462221.14e-82dnaJ homolog subfamily C member 2
TrEMBLA0A2K3KKM31e-131A0A2K3KKM3_TRIPR; DnaJ subfamily c member 2-like protein (Fragment)
STRINGAES821784e-80(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF60833348
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G11450.18e-58DnaJ domain ;Myb-like DNA-binding domain