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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | Tp57577_TGAC_v2_mRNA35520 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
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| Family | ARF | ||||||||
| Protein Properties | Length: 875aa MW: 97950.5 Da PI: 5.3527 | ||||||||
| Description | ARF family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | B3 | 76.2 | 3.8e-24 | 158 | 259 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT- CS
B3 1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegD 78
f+k+lt sd++++g +++p++ ae+ +++++ ++l+++d++ ++W++++iyr++++r++lt+GW+ Fv +++L++gD
Tp57577_TGAC_v2_mRNA35520 158 FCKTLTASDTSTHGGFSVPRRAAEKLfppldyTIQPPT-QELVVRDLHDNTWTFRHIYRGQPKRHLLTTGWSLFVGSKRLRAGD 240
99*********************999*****9555555.49******************************************* PP
EEEEEE-SSSEE..EEEEE-S CS
B3 79 fvvFkldgrsefelvvkvfrk 99
+v+F ++++ +l+v+v+r+
Tp57577_TGAC_v2_mRNA35520 241 SVLFI--RDEKSQLRVGVRRA 259
*****..4577778****997 PP
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| 2 | Auxin_resp | 101.6 | 9.9e-34 | 284 | 373 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPr......astseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnS 77
aahaa+++s+F+++YnPr a++s+Fv++++k++k+++ +++svGmRf m+fete+s +rr++Gt+vg+ d+dp+rWp+S
Tp57577_TGAC_v2_mRNA35520 284 AAHAAANRSPFTIFYNPRytylymACPSDFVIPLAKYRKSVYgTQLSVGMRFGMMFETEESGKRRYMGTIVGIGDVDPLRWPGS 367
79***************9555555679***************9***************************************** PP
Auxin_resp 78 kWrsLk 83
kWr+++
Tp57577_TGAC_v2_mRNA35520 368 KWRNIQ 373
***986 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| SuperFamily | SSF101936 | 1.44E-46 | 148 | 287 | IPR015300 | DNA-binding pseudobarrel domain |
| Gene3D | G3DSA:2.40.330.10 | 8.2E-42 | 150 | 272 | IPR015300 | DNA-binding pseudobarrel domain |
| CDD | cd10017 | 5.19E-23 | 157 | 258 | No hit | No description |
| PROSITE profile | PS50863 | 13.056 | 158 | 260 | IPR003340 | B3 DNA binding domain |
| SMART | SM01019 | 6.3E-25 | 158 | 260 | IPR003340 | B3 DNA binding domain |
| Pfam | PF02362 | 1.3E-21 | 158 | 259 | IPR003340 | B3 DNA binding domain |
| Pfam | PF06507 | 7.9E-29 | 284 | 373 | IPR010525 | Auxin response factor |
| Pfam | PF02309 | 5.1E-11 | 765 | 855 | IPR033389 | AUX/IAA domain |
| PROSITE profile | PS51745 | 23.282 | 768 | 852 | IPR000270 | PB1 domain |
| SuperFamily | SSF54277 | 3.63E-8 | 769 | 847 | No hit | No description |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
| GO:0009733 | Biological Process | response to auxin | ||||
| GO:0009908 | Biological Process | flower development | ||||
| GO:0009942 | Biological Process | longitudinal axis specification | ||||
| GO:0010305 | Biological Process | leaf vascular tissue pattern formation | ||||
| GO:0048364 | Biological Process | root development | ||||
| GO:0048507 | Biological Process | meristem development | ||||
| GO:0005634 | Cellular Component | nucleus | ||||
| GO:0016020 | Cellular Component | membrane | ||||
| GO:0042802 | Molecular Function | identical protein binding | ||||
| GO:0044212 | Molecular Function | transcription regulatory region DNA binding | ||||
| Sequence ? help Back to Top |
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| Protein Sequence Length: 875 aa Download sequence Send to blast |
MSSLEEKAKS VGAGGVGGGL VAEMKLLKEM QEHCETLFLY IVNFCLGVRK TLNSELWHAC 60 AGPLVSLPQV GGLVYYFPQG HSEQVAASTR RTATSQIPNY PNLPSQLLCQ VQNVTLHADK 120 ETDEIYAQMT LQPLNSEKEV FPISEFGLSK SKHPTEFFCK TLTASDTSTH GGFSVPRRAA 180 EKLFPPLDYT IQPPTQELVV RDLHDNTWTF RHIYRGQPKR HLLTTGWSLF VGSKRLRAGD 240 SVLFIRDEKS QLRVGVRRAN RQQTTLPSSV LSADSMHIGV LAAAAHAAAN RSPFTIFYNP 300 RYTYLYMACP SDFVIPLAKY RKSVYGTQLS VGMRFGMMFE TEESGKRRYM GTIVGIGDVD 360 PLRWPGSKWR NIQAEWDEPG CGDKQNRVSV WEIETPESLF IFPPMTSSLK RPFQSGFSEN 420 EWGTLLRRPF IKAPENGTMD LSNSMSNLYQ ENIMKMLYKP QVINNNGTFL PVMQQEYVPT 480 RVPLQDMKSS QAIENPDVHL SSTESIIPNS LNMHSLLKSD QPETLHPLSK TDKLKLESEV 540 LPDNMFDFPP FEGSSIEAAN QLTYHNQNQI QNPSLTQTSP WPMQQPQLES SLLHPQLIDT 600 VQPNSSIINN MLPQLDVDEW MTYSSCQHQV VNPSIPSMNQ EVWDNYVKNF NLKDLSDESN 660 NQSEICASVD VSNSVNNTTM ADPSTSHTIF DDFCTMKDKD FQQHQDCMVG NLSSSQDGQS 720 QITSASLAES HAFPLRDNSG GTSSSHVDFD ESSFLNNNSW KQVAAPIRTY TKVQKAGSVG 780 RSIDVTTFKN YEELVRAIEC MFGLDGLLND TKGSGWKLVY VDYESDVLLV GDDPWEEFVG 840 CVRCIRILSP SEVKEMSEEG MKLLNSGALQ GINV* |
| 3D Structure ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
| 4ldu_A | 0.0 | 20 | 398 | 33 | 392 | Auxin response factor 5 |
| Search in ModeBase | ||||||
| Functional Description ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Description | |||||
| UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Seems to act as transcriptional activator. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. Mediates embryo axis formation and vascular tissues differentiation. Functionally redundant with ARF7. May be necessary to counteract AMP1 activity. {ECO:0000269|PubMed:12036261, ECO:0000269|PubMed:14973283, ECO:0000269|PubMed:17553903}. | |||||
| Binding Motif ? help Back to Top | |||
|---|---|---|---|
| Motif ID | Method | Source | Motif file |
| MP00153 | DAP | Transfer from AT1G19850 | Download |
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| Cis-element ? help Back to Top | |
|---|---|
| Source | Link |
| PlantRegMap | Tp57577_TGAC_v2_mRNA35520 |
| Regulation -- PlantRegMap ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Upstream Regulator | Target Gene | ||||
| PlantRegMap | Retrieve | Retrieve | ||||
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_024631194.1 | 0.0 | auxin response factor 5 | ||||
| Refseq | XP_024631195.1 | 0.0 | auxin response factor 5 | ||||
| Swissprot | P93024 | 0.0 | ARFE_ARATH; Auxin response factor 5 | ||||
| TrEMBL | A0A2K3NR54 | 0.0 | A0A2K3NR54_TRIPR; Auxin response factor (Fragment) | ||||
| STRING | XP_004499235.1 | 0.0 | (Cicer arietinum) | ||||
| Orthologous Group ? help Back to Top | |||
|---|---|---|---|
| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Fabids | OGEF8991 | 32 | 41 |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT1G19850.1 | 0.0 | ARF family protein | ||||
| Link Out ? help Back to Top | |
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| Phytozome | Tp57577_TGAC_v2_mRNA35520 |
| ©2010-2022, Center
for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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