PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA35468
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family GRAS
Protein Properties Length: 554aa    MW: 61543.4 Da    PI: 5.3751
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA35468genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS340.82.3e-1041905532374
                       GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfs 85 
                                 + L+e+A  ++++  ++a ++L++l++  s++g+p+qR+ +yf +AL +++++ +    +++p+ ++s ++ +e + ++k+++
  Tp57577_TGAC_v2_mRNA35468 190 LKSLIEIASLIQTE-PNQAIETLTHLNKSISQNGNPNQRVSFYFSQALTNKITS-Q----SQIPSISSSVTTWEELTLSYKALN 267
                                5789*****99995.6667789*******************************9.3....444444444455789999****** PP

                       GRAS  86 evsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegpp.slRiTgvgspesg..skeeleetgerLa 166
                                +++P+ kf+hltaNqaIlea+eg++ +Hi+Df+i qG+QW+aLlqa+a+R++g+p s+Ri g+ +++ g     ++++tg+rL+
  Tp57577_TGAC_v2_mRNA35468 268 DACPYSKFAHLTANQAILEATEGATNIHIVDFGIVQGIQWAALLQAFATRSSGKPnSVRISGIPAMALGtsPVSSISATGNRLS 351
                                ***************************************************77776*********998898999********** PP

                       GRAS 167 kfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadh.n 249
                                +fA+ lg++fef++ + + ++ l+ +++ ++p+EalaVn++lql++llde+++  +   + L+l ksl+Pk+v++ e ea++ +
  Tp57577_TGAC_v2_mRNA35468 352 EFAKLLGLNFEFTP-ILTPIQLLNESSFCIQPNEALAVNFMLQLYNLLDETMDAVE---TALRLAKSLNPKIVTLGEYEASLtT 431
                                **************.799******************************99999999...9**********************88 PP

                       GRAS 250 sesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplseka 333
                                +  F++rf  a++y++a+f+sle +++ +s er  vE  llgr+i  v+  ++     r+e +e+W+  +e++GF++v+ls++a
  Tp57577_TGAC_v2_mRNA35468 432 RVGFVDRFKTAFNYFAAFFESLEPNMALDSPERFQVESLLLGRRIDGVIGLKE-----RMEDKEQWKVLMEKCGFESVSLSHYA 510
                                89***********************************************8754.....669999******************** PP

                       GRAS 334 akqaklllrkvk.sdgyrveeesgslv.lgWkdrpLvsvSaWr 374
                                 +qak ll +++ s  y++ e++  ++ l Wkd pL++vS+Wr
  Tp57577_TGAC_v2_mRNA35468 511 ISQAKILLWNYSySSLYSLVESQPGFLsLAWKDVPLLTVSSWR 553
                                ************9999****99999888**************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098554.39163531IPR005202Transcription factor GRAS
PfamPF035148.0E-102190553IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 554 aa     Download sequence    Send to blast
MAYMCADSGN LMAIAQQVIN QKQQQQEQHE QQHHQHQHHH HQNLLGLTNP LSLHPWNNSN  60
NNIPVSVSSL PPLSFPTTDF TDPFQVGSGQ ETPDPTFHFP PPLDPHSTTF RFSDFDSDDW  120
MDTLMAAADT QTHDFNLNPF SSCPTRLSPQ SDLLLPATVP LQIPIQQPPT PQRKNHTTTE  180
TTSSTTNPLL KSLIEIASLI QTEPNQAIET LTHLNKSISQ NGNPNQRVSF YFSQALTNKI  240
TSQSQIPSIS SSVTTWEELT LSYKALNDAC PYSKFAHLTA NQAILEATEG ATNIHIVDFG  300
IVQGIQWAAL LQAFATRSSG KPNSVRISGI PAMALGTSPV SSISATGNRL SEFAKLLGLN  360
FEFTPILTPI QLLNESSFCI QPNEALAVNF MLQLYNLLDE TMDAVETALR LAKSLNPKIV  420
TLGEYEASLT TRVGFVDRFK TAFNYFAAFF ESLEPNMALD SPERFQVESL LLGRRIDGVI  480
GLKERMEDKE QWKVLMEKCG FESVSLSHYA ISQAKILLWN YSYSSLYSLV ESQPGFLSLA  540
WKDVPLLTVS SWR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A1e-1391865531375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development (By similarity). Involved in environmental abiotic stress resistance. May increase the expression of stress-responsive genes (PubMed:20616154). Binds DNA in vitro (By similarity). {ECO:0000250|UniProtKB:Q53K16, ECO:0000250|UniProtKB:Q9SCR0, ECO:0000269|PubMed:20616154}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA35468
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by drought and high salt stresses, and down-regulated by gibberellic acid (GA) treatment, but not by plant hormone abscisic acid (ABA) application in leaves. Under the salt treatment, expression is induced quickly, and it peaks at 3 hours. Under the drought treatment, the expression is not induced immediately, but reaches its maximum at 3 hours. Under the GA treatment, the expression becomes weaker within 5 hours. {ECO:0000269|PubMed:20616154}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1422220.0AC142222.22 Medicago truncatula clone mth2-27d20, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003607414.20.0SCARECROW-LIKE protein 7
SwissprotA0A024B7I00.0SCL7_POPEU; SCARECROW-LIKE protein 7
TrEMBLA0A2K3MS330.0A0A2K3MS33_TRIPR; SCARECROW-like protein 4-like
STRINGAES896110.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF62803449
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66770.11e-155GRAS family protein