PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA35450
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family MYB_related
Protein Properties Length: 728aa    MW: 81334.7 Da    PI: 8.6192
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA35450genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding22.42.9e-07626675147
                                TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS
            Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 
                                r +++  E e lv+av++lG+g+W+ +  +     k+Rt  ++k++w ++
  Tp57577_TGAC_v2_mRNA35450 626 RRPFSVAEVEALVEAVERLGTGRWRDVKLRAFddaKHRTYVDLKDKWKTL 675
                                6789999*******************9988889**************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF542364.4E-9426515IPR029071Ubiquitin-related domain
Gene3DG3DSA:3.10.20.906.6E-5429501No hitNo description
PROSITE profilePS500539.482431501IPR000626Ubiquitin domain
PROSITE profilePS5129414.393621680IPR017930Myb domain
SMARTSM007176.8E-7625678IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.609.7E-10626676IPR009057Homeodomain-like
SuperFamilySSF466895.08E-15627708IPR009057Homeodomain-like
CDDcd116602.80E-17627677No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 728 aa     Download sequence    Send to blast
MVAQNRINYG FNGYQVPKKP RAARSPRKRD TLQRSVENDR MCAIDLLATV AAGTLLQEKQ  60
NPIIPSDGSP KKDQHGFVKE EDEDANTPFK AELPNEASCD KRLQHGFVKE ACADANKPLK  120
AELSDDGSSE KKCFYTLSSQ VYDPNFCSKE NLHHPEIDGQ SCIASIVTSS SCSERFVTDN  180
MVDRKSHSEM KNITSKVELG SSGYPDCNDC NLDVHVSIVK DEVQNSEKVP IGTSVGMCCF  240
EDPVDEKPQV PVNLGGNAKL SGYEDSTPHN SLFKGCDNVT VVGRDDDENF SGCSHPSSKT  300
KTFRSKTCIG DQRIRKRLAS KYRKVARESK HDTLSNNVVD RNFNTVYSNR KNSYKRQLSQ  360
MNIPFKKRKI FDCSSTSNSN GYIRNDNTYY STKNDMNQGV SCSSARIRKD PGMSSLEGYH  420
RSALRSRDSH VKLRIKSFRV PELFIEIPET ATVASLKKAV MEAVTTLLRG GLRVGMILNG  480
KKLRDDSKTL LQTGISHDNA LDALGFTLEP NSSQSLPLTC AKDSLHVPSA DMPLSLIGQP  540
SSPAVVRPIQ RIQGFCDTEH QVTSLSNIVE SEHDSAPSPI STIGEKRLTD SKELVTIPEM  600
DTEGLAVLPV EQKPKRTEMS QRRRIRRPFS VAEVEALVEA VERLGTGRWR DVKLRAFDDA  660
KHRTYVDLKD KWKTLVHTAR ISPQQRRGEP VPQELLDRVL TAHAYWSQQQ QTKQHQLKHH  720
PETCLLL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2juh_A8e-566097151105Telomere binding protein TBP1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1620626QRRRIRR
Functional Description ? help Back to Top
Source Description
UniProtBinds specifically to the plant telomeric double-stranded DNA sequences. At least 6 repeats of telomeric sequences are required for binding.
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA35450
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0941294e-78BT094129.1 Soybean clone JCVI-FLGm-18O23 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003597364.20.0telomere repeat-binding protein 5 isoform X1
RefseqXP_024632533.10.0telomere repeat-binding protein 5 isoform X1
RefseqXP_024632534.10.0telomere repeat-binding protein 5 isoform X1
SwissprotQ6R0E31e-120TRP5_ARATH; Telomere repeat-binding protein 5
TrEMBLA0A2Z6M5Q80.0A0A2Z6M5Q8_TRISU; Uncharacterized protein
STRINGAES676150.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13562844
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07540.11e-110TRF-like 2