PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA3538
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family WRKY
Protein Properties Length: 358aa    MW: 40788 Da    PI: 5.7584
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA3538genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY91.46.9e-29132192259
                               --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
                      WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                               +DgynWrKYGqK++ ++++prsYYrCt++   +C+++k+v+rs+edp++++itY+g+H+++
  Tp57577_TGAC_v2_mRNA3538 132 EDGYNWRKYGQKDILSAKHPRSYYRCTFRntqNCWATKQVQRSDEDPTIFDITYRGKHTCS 192
                               8**************************998889**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081121.218126189IPR003657WRKY domain
Gene3DG3DSA:2.20.25.803.2E-28127193IPR003657WRKY domain
SuperFamilySSF1182902.09E-25130193IPR003657WRKY domain
SMARTSM007743.9E-40131193IPR003657WRKY domain
PfamPF031063.3E-26132191IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 358 aa     Download sequence    Send to blast
MENECNWEHN TLINELIQGM DVAKRLKEEL RTPYSLDTRD LQVQMILSSY EKALRILRCN  60
ESTSKSQTIT PLTTSLPESP ASTNGSPLSE DFDGAIQEHR EVKNKSKKRK VMPKLMDQIK  120
VSCESGLEGP HEDGYNWRKY GQKDILSAKH PRSYYRCTFR NTQNCWATKQ VQRSDEDPTI  180
FDITYRGKHT CSQGKNAIEP YKSQEKQEKL HSHNNNDIQH AHPSQESFTN FSNILTVKTD  240
NLGNEQSPFP STSFGYTTQE NHSWVPSGLE NDSFLSGLFQ THLLSPVTPE SNYFSSPTFQ  300
MSEFDGFYNN PRSESDITEI ISTNTSVTNS PIPNFHFPLD SVEIDPNFPF NTPGFFS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A3e-18132191968OsWRKY45
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA3538
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013447178.10.0probable WRKY transcription factor 41
TrEMBLA0A2K3N3770.0A0A2K3N377_TRIPR; WRKY transcription factor
STRINGGLYMA05G36970.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF49334157
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11070.13e-70WRKY family protein