PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA34971
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family MYB_related
Protein Properties Length: 241aa    MW: 27031.6 Da    PI: 3.9566
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA34971genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding25.33.5e-084282348
                               -HHHHHHHHTTTS-HHHHHHHHHHHT CS
            Myb_DNA-binding 23 tWktIartmgkgRtlkqcksrwqkyl 48
                               +W++Ia++++ gRt++++k+ w+++l
  Tp57577_TGAC_v2_mRNA34971  4 RWSKIASCLP-GRTDNEIKNVWNTHL 28
                               4*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.644132IPR017930Myb domain
SuperFamilySSF466892.77E-8336IPR009057Homeodomain-like
CDDcd001672.25E-5428No hitNo description
Gene3DG3DSA:1.10.10.601.1E-11429IPR009057Homeodomain-like
PfamPF002496.3E-6428IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 241 aa     Download sequence    Send to blast
MYFRWSKIAS CLPGRTDNEI KNVWNTHLKK KLVVKNSEST SGDDESKLES SITSPSSSES  60
FLSNEVPIKD SEKQVSNNDE LDNIINEDPK GSLSNSLSSS FESNILNSSQ IVNKKLLEQE  120
LAPLGTFDID NILEEMENTN DLIEIPWESD YDLWNFIDNI GCYQASVGEE NVQNNENEFG  180
ALGEKKESNN EVLPKNCGVE QEINLHEAFD FNDIIMSDSE LDFGDIQLWP SMPHNSSPKV  240
*
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA34971
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013464259.15e-82transcription factor MYB63
TrEMBLA0A072V8C91e-80A0A072V8C9_MEDTR; Myb transcription factor
STRINGXP_004488797.19e-70(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF100293042
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G56160.12e-11myb domain protein 72