PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA34811
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family bHLH
Protein Properties Length: 700aa    MW: 79690.8 Da    PI: 9.9038
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA34811genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH30.28.1e-106236631055
                                HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                        HLH  10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                                r+RR++iN+++  L+ l+P+      +K++ +++Le A++Y+k Lq
  Tp57577_TGAC_v2_mRNA34811 623 RKRREKINDRLRILQNLVPNG-----TKVDISTMLEDAIHYVKFLQ 663
                                9******************97.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF077271.5E-9871314IPR013103Reverse transcriptase, RNA-dependent DNA polymerase
SuperFamilySSF566729.12E-3071292No hitNo description
SuperFamilySSF566729.12E-30322436No hitNo description
CDDcd092721.44E-19397438No hitNo description
SuperFamilySSF474591.05E-13612679IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.831613662IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.8E-12618674IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.9E-11619668IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.90E-11622667No hitNo description
PfamPF000104.5E-7623663IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 700 aa     Download sequence    Send to blast
MYRFILFLNH VTSKSAFPLK NYLSLSNLSN SYRAFLINVI ENKEPKSYSQ AIQSAEWREA  60
MAKEIHALES NNTWVLSPLP KGKSAIGCKW VYKIKYHSDG TVERYKARLV AKGYNQVHGI  120
DYHDTFAPVA KLVTVRLLLS IAAIKNWSLH QLDVNNAFLQ GDLNEEVYMK LPPGFSHKGK  180
PCVCKLNKSI YGLKQASRQW FSKFSTTLIQ KGFRQSISDY SLFTYKSNQT TIFVLVYVDD  240
IIITRNNEDA ISDIKRFLAK AFSIKDLGNL SYFLGIEVSR SKKGIFLCQR KYTLDILSDS  300
GMTGCRPSDF PMEQHLRLRP NDGSPLPDLT IYRRLIGRLL YLTVTRPDFQ YAVNTLSQFM  360
QSPCTTHLDA ATRVLRYLKG SVSKGLFLSA SSSLNLVGYA DSDWAGCPTT RRSTTGYFTM  420
LGSNPISWKT KKQPTISRXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX  480
XXXXXXXXXX XXXXXXXXXX XDAIYKIGTL SXXXXXXXXX XXXXXXXXXX XXXXXXXXXX  540
XRFLHGNNFW NWNDNEVKEN GFSLETSMES DSSSGYTSEE HNMYEENSGG ATSASKSTMA  600
LNSNGKTRAN RGSATDPQSL YARKRREKIN DRLRILQNLV PNGTKVDIST MLEDAIHYVK  660
FLQLQIKLLS SDDMWMYAPI AYNGLDIGVN FNQKISPPP*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1622627RKRREK
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA34811
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGU4439599e-70GU443959.1 Trifolium repens clone BAC 11l07 cyclin d, calcium ATPase, E3 ubiquitin ligase, galactose oxidase, adeninephosphoribosyl transferase, kruppel-like zinc finger protein, and cysteine protease genes, complete cds; and unknown genes.
GenBankGU4439629e-70GU443962.1 Trifolium repens clone BAC 38j22 galactose oxidase, adeninephosphoribosyl transferase, kruppel-like zinc finger protein, transcription initiation factor, and proteinase inhibitor genes, complete cds; and unknown genes.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017179858.21e-178uncharacterized protein LOC108169972
RefseqXP_024196177.11e-174uncharacterized protein LOC112199378
TrEMBLA0A2K3N4N40.0A0A2K3N4N4_TRIPR; Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment)
TrEMBLA0A392M1B80.0A0A392M1B8_9FABA; Uncharacterized protein
STRINGXP_009338880.11e-170(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF122
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33880.14e-52ROOT HAIR DEFECTIVE 6-LIKE 2