PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA34421
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family ERF
Protein Properties Length: 350aa    MW: 40091.9 Da    PI: 4.7857
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA34421genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.41.7e-18119168255
                        AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                                +++GVr ++ +g+W+AeIrdp +   r r +lg+f taeeAa  ++aa+ k++g
  Tp57577_TGAC_v2_mRNA34421 119 KFRGVRMRP-WGKWAAEIRDPGT---RVRLWLGTFNTAEEAAMVYDAAAIKFRG 168
                                89*******.**********833...5************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.105.1E-29118175IPR001471AP2/ERF domain
PROSITE profilePS5103223.459119176IPR001471AP2/ERF domain
PfamPF008472.9E-11119168IPR001471AP2/ERF domain
SuperFamilySSF541712.09E-21119176IPR016177DNA-binding domain
CDDcd000182.26E-33119175No hitNo description
SMARTSM003809.4E-38119182IPR001471AP2/ERF domain
PRINTSPR003678.2E-10120131IPR001471AP2/ERF domain
PRINTSPR003678.2E-10142158IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 350 aa     Download sequence    Send to blast
MEQQQSILCK TTVHHQTFTK KYTKPKKRND TNSNQIELPR VIRLTVTDAD ATDSSSDEET  60
QCLIPRRRIK HYVNQIDIKT VVETTVSGSK KRSSRESKLK SSRRPEKKVA VAVAKDERKF  120
RGVRMRPWGK WAAEIRDPGT RVRLWLGTFN TAEEAAMVYD AAAIKFRGKD AVTNFGIPEF  180
ENTEKIEVVK EKTKININNV KTEISVSGED SGDEFVNLSS PTSVLRYRRE EMNENAKKPF  240
NEEDHESVEP FGECEGETRF FEETNEFFRQ EMDDVFNFPT TCEYFSSMFD ETPMEFFDET  300
TEVLVNECCL SDHVEFDKTH SLSSSSEALC EGDEILDDIL LGLEPLVVL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A4e-19118175159ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA34421
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013466377.11e-148ethylene-responsive transcription factor CRF3
TrEMBLA0A2K3MTY00.0A0A2K3MTY0_TRIPR; Ethylene-responsive transcription factor crf4-like protein
STRINGXP_004498391.11e-127(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45034161
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G27950.12e-28cytokinin response factor 4