PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA34381
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family MYB
Protein Properties Length: 503aa    MW: 56981.2 Da    PI: 7.5289
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA34381genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding431.1e-132569348
                               SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
            Myb_DNA-binding  3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                                WT+eEde+l + +  +G+++W  Ia+++   +t  qc+ rw++yl
  Tp57577_TGAC_v2_mRNA34381 25 TWTQEEDEILREQIGIHGTENWVIIASKFK-DKTTRQCRRRWYTYL 69
                               6****************************9.*************97 PP
2Myb_DNA-binding42.51.5e-1375116144
                                TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHH CS
            Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrw 44 
                                +g WT+eEd ll +a k +G++ W+ Ia+ +  gRt++ +k+r+
  Tp57577_TGAC_v2_mRNA34381  75 KGGWTPEEDMLLCEAQKVFGNK-WTEIAKVVS-GRTDNAVKNRF 116
                                688*******************.*********.**********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.8171869IPR017930Myb domain
SMARTSM007173.2E-132271IPR001005SANT/Myb domain
SuperFamilySSF466894.12E-2622116IPR009057Homeodomain-like
CDDcd001675.93E-122569No hitNo description
PfamPF139212.2E-142686No hitNo description
Gene3DG3DSA:1.10.10.603.7E-202677IPR009057Homeodomain-like
PROSITE profilePS5129420.87770124IPR017930Myb domain
SMARTSM007177.4E-1374122IPR001005SANT/Myb domain
CDDcd001672.86E-978116No hitNo description
Gene3DG3DSA:1.10.10.609.9E-1878121IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 503 aa     Download sequence    Send to blast
MMDVKKEKEQ GNVESSKKKG RRLVTWTQEE DEILREQIGI HGTENWVIIA SKFKDKTTRQ  60
CRRRWYTYLN SNFKKGGWTP EEDMLLCEAQ KVFGNKWTEI AKVVSGRTDN AVKNRFSILR  120
KKREKSAALE KENIIQYIDS NSKRNISHQG YITNANSESA MPVKKMRRAH IPDDANKINF  180
GDRSHLRNAA STNQQPRAPF SELAKKSNCV NNLPDRHHIF NDKFNSSGQN NKNQLKTDDP  240
KISALIQIID SENMDNLWKP LLEFLNRTDI IGEKIEVLQL VSRMVKDLKS SSNERGHSGL  300
RQMELDEDSP GSSEHSSGST LLTKSTGTGD NLENSLNQDI GTEMKATQFE VKKEESKGVE  360
DIGTEMKATQ FEVKKEEPEG VEDIGTEMKA TQFEVKKEES EGVEGVLSTG KVEQDMMPHG  420
EEQINASLRM ECSPLQVTPI FRSLAEEIPS PEFSESEKSF LRKALGVESP SINTTFSPFK  480
LPPCNCQKKK LPPCKRSLQY DT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A7e-262611710101B-MYB
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1119124RKKREK
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA34381
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013445757.10.0transcription factor MYB124
RefseqXP_024627595.10.0transcription factor MYB124
TrEMBLA0A2K3P5820.0A0A2K3P582_TRIPR; MYB domain protein 88
STRINGGLYMA02G02310.11e-167(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF34803461
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G02820.17e-89myb domain protein 88