PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA34134
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family C2H2
Protein Properties Length: 315aa    MW: 35990.8 Da    PI: 8.4374
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA34134genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.41.2e-05151170120
                                EEETTTTEEESSHHHHHHHH CS
                    zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                                + C++C+k+F+r  n++ H+
  Tp57577_TGAC_v2_mRNA34134 151 FACSICNKTFNRYNNMQMHM 170
                                78*****************9 PP
2zf-C2H213.20.00027235257123
                                EEETTTTEEESSHHHHHHHHHHT CS
                    zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                                + C +C+k F  k + ++H +++
  Tp57577_TGAC_v2_mRNA34134 235 FICRKCSKAFAVKGDWRTHEKNC 257
                                89*****************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576674.04E-6129174No hitNo description
PROSITE profilePS5015710.512151178IPR007087Zinc finger, C2H2
PfamPF139121.6E-4151170IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.603.5E-6151170IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.081151173IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280153173IPR007087Zinc finger, C2H2
SuperFamilySSF576676.66E-6221255No hitNo description
Gene3DG3DSA:3.30.160.602.2E-5221255IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM0035567235255IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 315 aa     Download sequence    Send to blast
MGLRDKCNVE DKNLYLQTPT FIEWLKPSSS LSSSPSSSLT HQQEISQETF QFLPIYSGIK  60
SFEENHGMQK EDLEVKEEKV EHVTVALHIG LPNIGGGETN NHDEKNKLFD EKNKVNKEEE  120
LKKNLHGFCF KEEKRFWIPT PAQILVGPMQ FACSICNKTF NRYNNMQMHM WGHGSEFRKG  180
PDSLKGTQPA AMLRLPCYCC ANGCKNNINH PRAKPLKDFR TLQTHYKRKH GTKPFICRKC  240
SKAFAVKGDW RTHEKNCGKF WYCTCGSDFK HKRSLKDHVR SFGKGHSPNP SIEGFEDEKE  300
CSNTGSDDDE VAHA*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator. {ECO:0000305|PubMed:20541552}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA34134
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2350920.0AC235092.3 Medicago truncatula strain A17 clone mth2-24c5, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024631624.10.0zinc finger protein WIP3-like
SwissprotQ9SGD11e-119ZWIP3_ARATH; Zinc finger protein WIP3
TrEMBLA0A396JBA60.0A0A396JBA6_MEDTR; Putative transcription factor C2H2 family
STRINGAES670470.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17034289
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08290.11e-111WIP domain protein 3
Publications ? help Back to Top
  1. Zhou X,Meier I
    Efficient plant male fertility depends on vegetative nuclear movement mediated by two families of plant outer nuclear membrane proteins.
    Proc. Natl. Acad. Sci. U.S.A., 2014. 111(32): p. 11900-5
    [PMID:25074908]