PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Tp57577_TGAC_v2_mRNA33487 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
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Family | MYB_related | ||||||||
Protein Properties | Length: 570aa MW: 65858.8 Da PI: 8.1432 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 22.1 | 3.6e-07 | 8 | 43 | 3 | 37 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.TTS-H CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmg.kgRtl 37 +W t+E++ll av ++G+++W+ +a+++ ++++ Tp57577_TGAC_v2_mRNA33487 8 NWGTWEELLLGGAVLRHGTRDWSVVAAELRaRTLSP 43 7*****************************555555 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47370 | 1.07E-19 | 260 | 364 | IPR001487 | Bromodomain |
Gene3D | G3DSA:1.20.920.10 | 1.3E-16 | 261 | 364 | IPR001487 | Bromodomain |
SMART | SM00297 | 1.4E-19 | 263 | 367 | IPR001487 | Bromodomain |
CDD | cd04369 | 2.31E-14 | 266 | 362 | No hit | No description |
Pfam | PF00439 | 3.3E-12 | 271 | 351 | IPR001487 | Bromodomain |
PROSITE profile | PS50014 | 9.932 | 286 | 348 | IPR001487 | Bromodomain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 570 aa Download sequence Send to blast |
MGAEVIVNWG TWEELLLGGA VLRHGTRDWS VVAAELRART LSPYAITPEV CKAKYEDIQQ 60 RYSGCTAWFE ELKKKRVEEL KRALEKSENS IGSLQSRLES LKADKNEKRD DCHVENDSVE 120 PELRVPSQKL ERVESSTKET SKDGLSAGSF THQTETNWSH ECQVPAMSSE DMEITLGVSG 180 SIEHEKVLNV DKLADTVYEG QGGCCKKRRG KRKRKDCGRN INEASVRESD FSIDVSRLKE 240 SSTSNCGEVV KSSGITEENT NFKKDEMKDM MEILDSVMEI KGASCFTRKH DSQKRARYRQ 300 LIRRHMDFDT IRSSISNKKI NSKIELFRDM LLLANNALIF YSKNTRQYKS ALLMREIVTE 360 KLRENGTVXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX 420 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX 480 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX 540 XXXXXXXXXX XXXXXXXXXX XXXXXXXXM* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 205 | 210 | KKRRGK |
2 | 207 | 215 | RRGKRKRKD |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Tp57577_TGAC_v2_mRNA33487 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004504999.1 | 0.0 | uncharacterized protein LOC101514166 isoform X1 | ||||
Refseq | XP_004505002.1 | 0.0 | uncharacterized protein LOC101514166 isoform X3 | ||||
TrEMBL | A0A2Z6PGI6 | 0.0 | A0A2Z6PGI6_TRISU; Uncharacterized protein (Fragment) | ||||
STRING | XP_004504999.1 | 0.0 | (Cicer arietinum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G42150.1 | 5e-18 | DNA-binding bromodomain-containing protein |
Link Out ? help Back to Top | |
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Phytozome | Tp57577_TGAC_v2_mRNA33487 |