PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA33486
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family MYB_related
Protein Properties Length: 570aa    MW: 65858.8 Da    PI: 8.1432
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA33486genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding22.13.6e-07843337
                               SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.TTS-H CS
            Myb_DNA-binding  3 rWTteEdellvdavkqlGggtWktIartmg.kgRtl 37
                               +W t+E++ll  av ++G+++W+ +a+++   ++++
  Tp57577_TGAC_v2_mRNA33486  8 NWGTWEELLLGGAVLRHGTRDWSVVAAELRaRTLSP 43
                               7*****************************555555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF473701.07E-19260364IPR001487Bromodomain
Gene3DG3DSA:1.20.920.101.3E-16261364IPR001487Bromodomain
SMARTSM002971.4E-19263367IPR001487Bromodomain
CDDcd043692.31E-14266362No hitNo description
PfamPF004393.3E-12271351IPR001487Bromodomain
PROSITE profilePS500149.932286348IPR001487Bromodomain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 570 aa     Download sequence    Send to blast
MGAEVIVNWG TWEELLLGGA VLRHGTRDWS VVAAELRART LSPYAITPEV CKAKYEDIQQ  60
RYSGCTAWFE ELKKKRVEEL KRALEKSENS IGSLQSRLES LKADKNEKRD DCHVENDSVE  120
PELRVPSQKL ERVESSTKET SKDGLSAGSF THQTETNWSH ECQVPAMSSE DMEITLGVSG  180
SIEHEKVLNV DKLADTVYEG QGGCCKKRRG KRKRKDCGRN INEASVRESD FSIDVSRLKE  240
SSTSNCGEVV KSSGITEENT NFKKDEMKDM MEILDSVMEI KGASCFTRKH DSQKRARYRQ  300
LIRRHMDFDT IRSSISNKKI NSKIELFRDM LLLANNALIF YSKNTRQYKS ALLMREIVTE  360
KLRENGTVXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX  420
XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX  480
XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX  540
XXXXXXXXXX XXXXXXXXXX XXXXXXXXM*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1205210KKRRGK
2207215RRGKRKRKD
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA33486
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004504999.10.0uncharacterized protein LOC101514166 isoform X1
RefseqXP_004505002.10.0uncharacterized protein LOC101514166 isoform X3
TrEMBLA0A2Z6PGI60.0A0A2Z6PGI6_TRISU; Uncharacterized protein (Fragment)
STRINGXP_004504999.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF63041723
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42150.15e-18DNA-binding bromodomain-containing protein